Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AACH63_RS00495 Genome accession   NZ_AP027240
Coordinates   92500..93291 (+) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus formosensis strain L21-20     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 87500..98291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH63_RS00465 (LG21E20_00860) rpmH 88203..88337 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  AACH63_RS00470 (LG21E20_00870) - 88488..89399 (+) 912 WP_096368844.1 aldo/keto reductase -
  AACH63_RS00475 (LG21E20_00880) - 89578..89844 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  AACH63_RS00480 (LG21E20_00890) ruvX 89844..90272 (+) 429 WP_017368693.1 Holliday junction resolvase RuvX -
  AACH63_RS00485 (LG21E20_00900) - 90287..90616 (+) 330 WP_096368843.1 DUF1292 domain-containing protein -
  AACH63_RS00490 (LG21E20_00910) - 90756..92363 (+) 1608 WP_096368842.1 glycosyltransferase -
  AACH63_RS00495 (LG21E20_00920) codY 92500..93291 (+) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AACH63_RS00500 (LG21E20_00930) gatC 93436..93741 (+) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  AACH63_RS00505 (LG21E20_00940) gatA 93741..95213 (+) 1473 WP_096368841.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  AACH63_RS00510 (LG21E20_00950) gatB 95215..96648 (+) 1434 WP_096368840.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AACH63_RS00515 (LG21E20_00960) - 96662..98017 (-) 1356 WP_096368839.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=100240 AACH63_RS00495 WP_003133634.1 92500..93291(+) (codY) [Lactococcus formosensis strain L21-20]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=100240 AACH63_RS00495 WP_003133634.1 92500..93291(+) (codY) [Lactococcus formosensis strain L21-20]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATTATTGATACAAAAGGGAAGCTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGTTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTACTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACAATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483

Multiple sequence alignment