Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   EL160_RS05075 Genome accession   NZ_LR134351
Coordinates   992751..993902 (+) Length   383 a.a.
NCBI ID   WP_000020354.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13811     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 987751..998902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL160_RS05050 (NCTC13811_00963) yfmH 988581..989867 (+) 1287 WP_000664777.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EL160_RS05055 (NCTC13811_00964) ymfI 989867..990571 (+) 705 WP_000646219.1 elongation factor P 5-aminopentanone reductase -
  EL160_RS05060 (NCTC13811_00965) - 990676..991503 (+) 828 WP_000214890.1 YmfK family protein -
  EL160_RS05065 (NCTC13811_00966) - 991522..991914 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  EL160_RS05070 (NCTC13811_00967) pgsA 991948..992526 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL160_RS05075 (NCTC13811_00968) cinA 992751..993902 (+) 1152 WP_000020354.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  EL160_RS05080 (NCTC13811_00969) recA 994067..995110 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  EL160_RS05085 (NCTC13811_00970) rny 995464..997023 (+) 1560 WP_001050913.1 ribonuclease Y -
  EL160_RS05090 (NCTC13811_00971) - 997319..997534 (-) 216 WP_000026308.1 hypothetical protein -
  EL160_RS05095 (NCTC13811_00972) - 997708..998505 (+) 798 WP_001222103.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43167.38 Da        Isoelectric Point: 5.7673

>NTDB_id=1002291 EL160_RS05075 WP_000020354.1 992751..993902(+) (cinA) [Staphylococcus aureus strain NCTC13811]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSESRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1002291 EL160_RS05075 WP_000020354.1 992751..993902(+) (cinA) [Staphylococcus aureus strain NCTC13811]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTTC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTGAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment