Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AACH29_RS07805 | Genome accession | NZ_AP027239 |
| Coordinates | 1558868..1561114 (-) | Length | 748 a.a. |
| NCBI ID | WP_014025304.1 | Uniprot ID | F9VFH0 |
| Organism | Lactococcus garvieae strain L21-12 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1553868..1566114
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH29_RS07775 (LG21E12_15500) | uvrB | 1554019..1556007 (-) | 1989 | WP_014025300.1 | excinuclease ABC subunit UvrB | - |
| AACH29_RS07780 (LG21E12_15510) | - | 1556004..1556459 (-) | 456 | WP_014025301.1 | RNA pyrophosphohydrolase | - |
| AACH29_RS07785 (LG21E12_15520) | def | 1556565..1557191 (+) | 627 | WP_014025302.1 | peptide deformylase | - |
| AACH29_RS07790 (LG21E12_15530) | - | 1557234..1557479 (-) | 246 | WP_016170852.1 | hypothetical protein | - |
| AACH29_RS07795 (LG21E12_15540) | - | 1557615..1558493 (-) | 879 | WP_014025303.1 | HNH endonuclease | - |
| AACH29_RS07800 (LG21E12_15550) | - | 1558651..1558812 (-) | 162 | WP_231844102.1 | hypothetical protein | - |
| AACH29_RS07805 (LG21E12_15560) | clpC | 1558868..1561114 (-) | 2247 | WP_014025304.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| AACH29_RS07810 (LG21E12_15570) | rpoD | 1561336..1562562 (-) | 1227 | WP_308203563.1 | RNA polymerase sigma factor RpoD | - |
| AACH29_RS07815 | - | 1562575..1562733 (-) | 159 | Protein_1535 | translation initiation factor IF-2 N-terminal domain-containing protein | - |
| AACH29_RS07820 (LG21E12_15580) | dnaG | 1562754..1564640 (-) | 1887 | WP_338659848.1 | DNA primase | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83428.43 Da Isoelectric Point: 4.7434
>NTDB_id=100228 AACH29_RS07805 WP_014025304.1 1558868..1561114(-) (clpC) [Lactococcus garvieae strain L21-12]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLSQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARAELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLSQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARAELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=100228 AACH29_RS07805 WP_014025304.1 1558868..1561114(-) (clpC) [Lactococcus garvieae strain L21-12]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCTGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTATCCCAAAAAATTGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTGGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATTCTTAAACCGGCTTTAGCACGTGCCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCAGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGCATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCTGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGATGGACGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCGATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTCGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCTGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTATCCCAAAAAATTGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTGGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATTCTTAAACCGGCTTTAGCACGTGCCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCAGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGCATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCTGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGATGGACGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCGATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTCGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.541 |
99.332 |
0.86 |
| clpE | Streptococcus mutans UA159 |
76.556 |
100 |
0.773 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.291 |
97.727 |
0.755 |
| clpE | Streptococcus pneumoniae Rx1 |
77.291 |
97.727 |
0.755 |
| clpE | Streptococcus pneumoniae D39 |
77.291 |
97.727 |
0.755 |
| clpE | Streptococcus pneumoniae R6 |
77.291 |
97.727 |
0.755 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
52.809 |
83.289 |
0.44 |
| clpC | Streptococcus pneumoniae D39 |
45.879 |
85.963 |
0.394 |
| clpC | Streptococcus pneumoniae Rx1 |
45.879 |
85.963 |
0.394 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.723 |
85.963 |
0.393 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.471 |
81.952 |
0.389 |
| clpC | Streptococcus mutans UA159 |
46.365 |
82.754 |
0.384 |
| clpC | Streptococcus thermophilus LMD-9 |
45.527 |
83.69 |
0.381 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.161 |
82.888 |
0.374 |