Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAMY6639_RS16975 Genome accession   NZ_CP006058
Coordinates   3453913..3455049 (+) Length   378 a.a.
NCBI ID   WP_087920760.1    Uniprot ID   A7Z3N2
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448913..3460049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS16940 (BAMY6639_17755) - 3448958..3450316 (+) 1359 WP_060675173.1 HAMP domain-containing sensor histidine kinase -
  BAMY6639_RS20220 (BAMY6639_17760) - 3450436..3450618 (+) 183 Protein_3351 ATP-binding cassette domain-containing protein -
  BAMY6639_RS16950 (BAMY6639_17765) - 3450778..3450969 (+) 192 WP_015417277.1 hypothetical protein -
  BAMY6639_RS16965 (BAMY6639_17780) - 3452331..3453095 (-) 765 WP_007610763.1 sulfite exporter TauE/SafE family protein -
  BAMY6639_RS16970 (BAMY6639_17785) - 3453240..3453707 (-) 468 WP_015417279.1 DinB family protein -
  BAMY6639_RS16975 (BAMY6639_17790) rapC 3453913..3455049 (+) 1137 WP_087920760.1 Rap family tetratricopeptide repeat protein Regulator
  BAMY6639_RS20225 (BAMY6639_17795) - 3455039..3455173 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  BAMY6639_RS16980 (BAMY6639_17800) - 3455316..3456269 (+) 954 WP_015417280.1 N-acetylmuramoyl-L-alanine amidase -
  BAMY6639_RS16985 (BAMY6639_17805) - 3456307..3456684 (-) 378 WP_007610770.1 PH domain-containing protein -
  BAMY6639_RS16990 (BAMY6639_17810) - 3456795..3457397 (+) 603 WP_060674872.1 poly-gamma-glutamate hydrolase family protein -
  BAMY6639_RS16995 (BAMY6639_17815) - 3457468..3458304 (+) 837 WP_015417282.1 manganese catalase family protein -
  BAMY6639_RS17000 (BAMY6639_17820) - 3458326..3458916 (-) 591 WP_007407286.1 ImmA/IrrE family metallo-endopeptidase -
  BAMY6639_RS17005 (BAMY6639_17825) xre 3459065..3459403 (-) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  BAMY6639_RS17010 (BAMY6639_17830) - 3459594..3459773 (+) 180 WP_031378816.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45073.28 Da        Isoelectric Point: 4.9159

>NTDB_id=100227 BAMY6639_RS16975 WP_087920760.1 3453913..3455049(+) (rapC) [Bacillus amyloliquefaciens UMAF6639]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=100227 BAMY6639_RS16975 WP_087920760.1 3453913..3455049(+) (rapC) [Bacillus amyloliquefaciens UMAF6639]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTTCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATATTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTGAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTAGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z3N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426

Multiple sequence alignment