Detailed information NTG0100226

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: BAMY6639_RS16935
• Genome accession: NZ_CP006058
• Coordinates: 3448290..3448961 (+)
• Length: 223 a.a.
• NCBI ID: WP_060561818.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 3443290..3453961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS16920 (BAMY6639_17735)	-	3444096..3445094 (+)	999	WP_061861392.1	LacI family DNA-binding transcriptional regulator	-
BAMY6639_RS16925 (BAMY6639_17740)	-	3445170..3446615 (+)	1446	WP_061861393.1	tagaturonate reductase	-
BAMY6639_RS16930 (BAMY6639_17745)	-	3446612..3448105 (+)	1494	WP_060675172.1	UxaA family hydrolase	-
BAMY6639_RS16935 (BAMY6639_17750)	scnR	3448290..3448961 (+)	672	WP_060561818.1	response regulator transcription factor	Regulator
BAMY6639_RS16940 (BAMY6639_17755)	-	3448958..3450316 (+)	1359	WP_060675173.1	HAMP domain-containing sensor histidine kinase	-
BAMY6639_RS20220 (BAMY6639_17760)	-	3450436..3450618 (+)	183	Protein_3351	ATP-binding cassette domain-containing protein	-
BAMY6639_RS16950 (BAMY6639_17765)	-	3450778..3450969 (+)	192	WP_015417277.1	hypothetical protein	-
BAMY6639_RS16965 (BAMY6639_17780)	-	3452331..3453095 (-)	765	WP_007610763.1	sulfite exporter TauE/SafE family protein	-
BAMY6639_RS16970 (BAMY6639_17785)	-	3453240..3453707 (-)	468	WP_015417279.1	DinB family protein	-

Sequence

Protein

• Length: 223 a.a.
• Molecular weight: 26440.72 Da
• Isoelectric Point: 6.5038

>NTDB_id=100226 BAMY6639_RS16935 WP_060561818.1 3448290..3448961(+) (scnR) [Bacillus amyloliquefaciens UMAF6639]
MNNILYIEDDQEIGQFVKDDLEDRGYMMIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide

• Length: 672 bp

>NTDB_id=100226 BAMY6639_RS16935 WP_060561818.1 3448290..3448961(+) (scnR) [Bacillus amyloliquefaciens UMAF6639]
ATGAATAACATTTTATACATTGAAGATGATCAAGAAATTGGACAATTTGTAAAGGATGACTTAGAAGATCGGGGCTATAT
GATGATCTGGCTCACTTCTTCGTATAATTACGAAACATATATAGAAAAGGCAGATCTGATCGTGCTTGATATTATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCCAGA
ACGGGTCTGGAAGATAAGCTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAGCCCTTTCATCCCGATGAACTGGC
TGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTTCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAACAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCCGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACAA
TCAGGGGGATTGGATACAGGATCAAACAATGA

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (4-111)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (146-221)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	36	100	0.363