Detailed information NTG1002232

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL327_RS21255
• Genome accession: NZ_LR134342
• Coordinates: 4430677..4431681 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCTC10728
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4425677..4436681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL327_RS21225 (NCTC10728_04153)	fghA	4425769..4426620 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
EL327_RS21230 (NCTC10728_04154)	ispF	4426691..4427164 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EL327_RS21235 (NCTC10728_04155)	truD	4427161..4428228 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
EL327_RS21240 (NCTC10728_04156)	surE	4428216..4428965 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EL327_RS21245 (NCTC10728_04157)	-	4428998..4429633 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EL327_RS21250 (NCTC10728_04158)	-	4429679..4430572 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
EL327_RS21255 (NCTC10728_04159)	rpoS	4430677..4431681 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EL327_RS21260 (NCTC10728_04161)	fdxA	4432108..4432431 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EL327_RS21265 (NCTC10728_04162)	mutS	4432498..4435065 (-)	2568	WP_079389040.1	DNA mismatch repair protein MutS	-
EL327_RS21275 (NCTC10728_04163)	-	4435191..4436198 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1002232 EL327_RS21255 WP_003113871.1 4430677..4431681(+) (rpoS) [Pseudomonas aeruginosa strain NCTC10728]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1002232 EL327_RS21255 WP_003113871.1 4430677..4431681(+) (rpoS) [Pseudomonas aeruginosa strain NCTC10728]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653