Detailed information NTG1002207

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABFO07_RS04420
• Genome accession: NZ_CP156685
• Coordinates: 932782..933951 (-)
• Length: 389 a.a.
• NCBI ID: WP_059566541.1
• Uniprot ID: A0A125G9U0
• Organism: Burkholderia stagnalis strain YJ-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 927782..938951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFO07_RS04400	-	928279..928662 (+)	384	WP_059566537.1	nuclear transport factor 2 family protein	-
ABFO07_RS04405	leuA	928804..930450 (-)	1647	WP_059803156.1	2-isopropylmalate synthase	-
ABFO07_RS04410	ybiB	930860..931843 (-)	984	WP_059922949.1	DNA-binding protein YbiB	-
ABFO07_RS04415	maiA	932061..932705 (+)	645	WP_059885316.1	maleylacetoacetate isomerase	-
ABFO07_RS04420	pilA	932782..933951 (-)	1170	WP_059566541.1	signal recognition particle-docking protein FtsY	Machinery gene
ABFO07_RS04425	rsmD	934158..934772 (+)	615	WP_059803152.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ABFO07_RS04430	coaD	934884..935384 (+)	501	WP_059566543.1	pantetheine-phosphate adenylyltransferase	-
ABFO07_RS04435	-	935444..935710 (+)	267	WP_026045197.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ABFO07_RS04440	hisC	935760..936827 (-)	1068	WP_060149065.1	histidinol-phosphate transaminase	-
ABFO07_RS04445	pth	936933..937535 (-)	603	WP_017334271.1	aminoacyl-tRNA hydrolase	-
ABFO07_RS04450	-	937644..938249 (-)	606	WP_059566594.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 41186.28 Da
• Isoelectric Point: 5.0313

>NTDB_id=1002207 ABFO07_RS04420 WP_059566541.1 932782..933951(-) (pilA) [Burkholderia stagnalis strain YJ-2]
MFSFFKRFKKTQEPTPAESPSAAEPLPDAQPASAPADVPAASTPQPVAQPPAPAQPAAPAVVMTVTSAQNGRDEVVETVE
IVPPPVQDAGAKKSWLARLKSGLAKTGSNITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRAGRLTDP
QQVKVALRDLLVELLQPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTIWG
ERNNVTVVQQESGDPAAVIFDAVSAARARGIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQ
NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFADALLG

Nucleotide

• Length: 1170 bp

>NTDB_id=1002207 ABFO07_RS04420 WP_059566541.1 932782..933951(-) (pilA) [Burkholderia stagnalis strain YJ-2]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAACGCAGGAGCCGACTCCCGCGGAATCGCCGTCGGCCGCCGAGCCGCTGCC
GGATGCGCAGCCCGCGTCCGCGCCGGCCGATGTGCCTGCCGCGAGCACGCCGCAGCCGGTTGCGCAGCCGCCCGCCCCCG
CGCAACCGGCCGCGCCGGCCGTCGTGATGACGGTCACGTCGGCCCAGAACGGCCGCGACGAAGTCGTCGAGACGGTCGAG
ATCGTCCCGCCGCCCGTGCAGGACGCCGGCGCGAAGAAATCGTGGCTCGCGCGCCTGAAGTCCGGGCTCGCGAAGACCGG
CTCGAACATCACCGGCGTGTTCGTCAACACGAAAATCGACGAGGACCTCTACGAGGAGCTCGAAACCGCGCTGCTGATGT
CCGACGCCGGCGTCGACGCGACCGAATACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCCGGCCGGCTCACCGACCCG
CAGCAGGTCAAGGTCGCGCTGCGCGACCTGCTCGTCGAGCTGCTGCAGCCGCTCGAGAAATCGCTGATGCTCGGCCGCGC
GCAGCCGCTCGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACGACCAGCATCGGCAAGCTGGCCAAGCACCTGC
AGAGCTTCGACCAGTCGGTGCTGCTGGCCGCAGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTGACGATCTGGGGC
GAGCGCAACAACGTGACGGTCGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCG
GGCGCGCGGCATCGACGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAGCTGAAGA
AGGTGAAGCGCGTGATCTCGAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACGGGCCAG
AACGCGCTCACGCAGGTGAAGGCGTTCGACGACGCGCTCGGCCTGACCGGCCTCATCGTCACGAAGCTCGACGGCACCGC
GAAGGGCGGCATCCTGGCCGCGATCGCGCGGCAGCGCCCGGTGCCGGTCTACTTCATCGGCGTAGGCGAGAAGGTCGAGG
ACCTGCAGCCGTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (190-389)

• SRP54-type protein, helical bundle domain (SRP54_N) (108-169)

3D structure

• AlphaFold DB: A0A125G9U0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.901	100	0.586