Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   EL327_RS11460 Genome accession   NZ_LR134342
Coordinates   2379056..2379580 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain NCTC10728     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2374056..2384580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL327_RS11445 (NCTC10728_02239) aroB 2375184..2376290 (-) 1107 WP_016253983.1 3-dehydroquinate synthase -
  EL327_RS11450 (NCTC10728_02240) aroK 2376340..2376858 (-) 519 WP_003095833.1 shikimate kinase AroK -
  EL327_RS11455 (NCTC10728_02241) pilQ 2376870..2379002 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  EL327_RS11460 (NCTC10728_02242) comL/pilP 2379056..2379580 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EL327_RS11465 (NCTC10728_02243) pilO 2379577..2380200 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  EL327_RS11470 (NCTC10728_02244) pilN 2380197..2380793 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  EL327_RS11475 (NCTC10728_02245) pilM 2380793..2381857 (-) 1065 WP_034024943.1 type IV pilus assembly protein PilM Machinery gene
  EL327_RS11480 (NCTC10728_02246) - 2382042..2384510 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=1002192 EL327_RS11460 WP_003116136.1 2379056..2379580(-) (comL/pilP) [Pseudomonas aeruginosa strain NCTC10728]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1002192 EL327_RS11460 WP_003116136.1 2379056..2379580(-) (comL/pilP) [Pseudomonas aeruginosa strain NCTC10728]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362