Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   EL147_RS09935 Genome accession   NZ_LR134341
Coordinates   2027296..2030949 (+) Length   1217 a.a.
NCBI ID   WP_007894147.1    Uniprot ID   G5K6R5
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022296..2035949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS09920 (NCTC13786_01996) - 2022483..2022857 (+) 375 WP_007894293.1 OsmC family protein -
  EL147_RS09925 (NCTC13786_01997) - 2022970..2023887 (-) 918 WP_007894266.1 neutral zinc metallopeptidase -
  EL147_RS09930 (NCTC13786_01998) rexB 2024058..2027294 (+) 3237 WP_007894286.1 ATP-dependent nuclease subunit B Machinery gene
  EL147_RS09935 (NCTC13786_01999) rexA 2027296..2030949 (+) 3654 WP_007894147.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL147_RS09940 (NCTC13786_02000) rpsU 2031130..2031306 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  EL147_RS09945 (NCTC13786_02001) mscL 2031532..2031909 (-) 378 WP_007894068.1 large conductance mechanosensitive channel protein MscL -
  EL147_RS09950 (NCTC13786_02002) dnaG 2032035..2033843 (+) 1809 WP_007894277.1 DNA primase -
  EL147_RS09955 (NCTC13786_02003) rpoD 2033852..2034961 (+) 1110 WP_003084376.1 RNA polymerase sigma factor RpoD -
  EL147_RS09960 (NCTC13786_02004) - 2035256..2035594 (+) 339 WP_007894093.1 metal-sulfur cluster assembly factor -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139992.65 Da        Isoelectric Point: 5.7203

>NTDB_id=1002152 EL147_RS09935 WP_007894147.1 2027296..2030949(+) (rexA) [Streptococcus pseudoporcinus strain NCTC13786]
MIFPQFLSDKDIKKLQEKEAESNKAQKRTPEQIEAIYCNGQNILVSASAGSGKTFVMVERIIDKVMRGIAIDEMFISTFT
VKAATELKERLEKRFLALIKESSDAEWKAYLNQQLQGISQADIGTMDAFTQKLLSQYSYTLGISPKFRIMQDKSEQDILK
NRIYESIFANYMDSKESLTFMKTVKNFSGHRKDSKGFRAIVYKIYEFSQSTEDPLEWLEKTFLKASNSYTDFGSLPDTDI
EALLQSMQRTATSLRDLTELEDYGQLTKAGKPSAKYQKHLQMIQLLQEWSLHFDTYYGKEQISQLARDVLALLPTGDAVT
INKRKYSVFKDLQARLKDVQHLETIFTFQAETLPLLKLLQAFVLDFSKAYLKAKIEENAFEFSDVAHFAIAILENNPEIQ
VSYQNKYHEVMVDEYQDNNHIQEKLLELLSNGHNRFMVGDIKQSIYRFRQADPLIFNQKFKDYQENPENGRLILLKENFR
SQSEVLAVTNAVFSHLMDEAVGDILYDTSHRLLPGSSRQEESFPENRCQLLLYNTDSQDQSQQPDSSEMLSDNQVSPGEV
KIVAKEIIRLHNDEQVAFSDITLLVSSRTRNDNILRTFNRLGIPLVSDGGLDHYLQSVEIMVMLDTLRTINNPLNDYALV
ALLKSPMFAFDEDQLARIALQESRQDKVESFYEKIQNALSKKGLYPDLVTNDLQESLIRFDKILKQWRLFAKKNSLYDLI
WKIYNDRFYFDYVATSPKAEQAQANLYALALRASQFEKTGYRGLSRFISMIDRILETENDLADVDIVQAKDAVNLMTIHK
SKGLEFKYVFILNCDKKFSFKDLYAPAILDRQQGIGIKYLADFKTLLDAEQLSSLKVTLETLPYQMNRKALKRATLSEQM
RLLYVAMTRAEKKLYLIGKGSQEKLADKYDGQREGNHLPRTVRENLQSFQDWFLAIRESFAQEELYFDLRFESDSDLGDD
AIGQLVVKEVLDPDNLAHNRQSDHIARALDMLEKVNQLNQSYHAAIHLPTVQTPSQLKDFYQPIMDSEGVAVIEKSRPLS
QASFVLPNFSENLTIDASQIGSSLHELMQKITISERVTQESVRKALTLVNASESLKAKLDLDKIIQFFNQTALGQLICNH
HQKLHREAPFAMLKKDMLSQEKFVVRGIIDGYLLFKDKIILFDYKTDKYHQASELERRYAGQLALYAEALSQAYNIDTVE
KYLVLLGGEDLEVISVL

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=1002152 EL147_RS09935 WP_007894147.1 2027296..2030949(+) (rexA) [Streptococcus pseudoporcinus strain NCTC13786]
ATGATCTTTCCACAATTTTTAAGTGACAAGGACATTAAGAAACTACAAGAAAAAGAAGCTGAATCTAATAAAGCACAAAA
ACGAACGCCTGAGCAAATTGAAGCAATCTATTGTAATGGACAGAATATCCTAGTTTCTGCATCAGCTGGTTCAGGGAAAA
CTTTTGTTATGGTTGAACGGATTATTGATAAGGTCATGCGTGGTATTGCCATTGATGAAATGTTCATATCTACTTTTACA
GTCAAAGCCGCTACGGAGCTAAAAGAACGCCTGGAAAAGAGATTCTTAGCCTTGATCAAAGAAAGCAGCGATGCCGAATG
GAAGGCTTATTTGAATCAGCAATTACAAGGAATTTCTCAAGCAGATATTGGTACCATGGACGCCTTTACCCAAAAGCTCT
TGTCCCAATATAGCTACACCTTAGGTATCTCACCAAAGTTTCGAATCATGCAGGATAAGTCGGAACAAGATATCCTCAAA
AACAGAATTTATGAATCAATTTTTGCTAACTATATGGATTCAAAAGAGAGTTTGACCTTTATGAAAACAGTCAAAAATTT
CTCTGGACATCGAAAAGATTCTAAAGGGTTTCGAGCAATTGTCTATAAGATTTATGAGTTTAGCCAATCGACCGAAGATC
CTTTGGAATGGTTAGAGAAAACTTTTCTAAAGGCCAGTAACAGTTATACTGATTTTGGTAGTTTGCCAGATACTGATATA
GAAGCTTTGCTCCAAAGCATGCAAAGAACAGCAACTAGTTTACGTGATCTGACAGAATTAGAAGATTACGGACAACTGAC
AAAAGCAGGAAAACCTAGTGCTAAATACCAAAAGCATCTACAGATGATCCAATTACTGCAAGAATGGTCCCTCCACTTTG
ACACTTACTATGGCAAAGAACAGATTAGTCAATTAGCTAGAGATGTTTTGGCACTTTTGCCAACTGGTGATGCTGTGACG
ATCAATAAGCGAAAATATAGTGTTTTTAAAGACTTACAAGCGCGCCTAAAAGATGTGCAACATTTGGAAACTATTTTTAC
TTTTCAAGCAGAAACCTTACCATTATTAAAACTTTTACAAGCTTTTGTCCTTGATTTCAGCAAAGCTTATTTAAAAGCAA
AAATAGAAGAGAATGCTTTTGAATTTTCTGATGTTGCTCATTTTGCCATTGCTATATTGGAAAATAATCCTGAGATTCAA
GTGTCTTATCAGAACAAATATCATGAAGTTATGGTTGATGAGTATCAGGACAATAACCATATTCAAGAAAAACTCTTGGA
ATTATTGTCAAATGGTCACAATCGTTTTATGGTAGGAGATATTAAACAGTCAATCTACCGTTTTAGACAAGCAGATCCGC
TTATTTTTAACCAAAAGTTTAAAGATTATCAAGAAAACCCGGAAAATGGCAGACTGATTCTATTGAAAGAGAATTTCCGG
AGTCAGTCAGAAGTCTTGGCGGTCACCAATGCAGTATTTTCTCATTTAATGGACGAAGCAGTTGGCGATATTCTTTATGA
TACTAGCCATCGTTTATTACCTGGTAGTTCTCGTCAAGAAGAAAGCTTCCCAGAAAATAGGTGTCAACTGTTACTATACA
ATACCGACAGTCAAGATCAGAGTCAGCAGCCAGATTCTAGTGAGATGCTTAGTGATAATCAAGTCTCACCTGGTGAGGTC
AAAATTGTTGCTAAAGAAATTATTCGTCTTCATAATGACGAGCAAGTAGCTTTTTCGGATATTACGCTCTTGGTTTCGTC
TCGAACGCGAAATGATAATATCTTGCGAACCTTTAATCGTTTGGGGATTCCCTTAGTGTCTGATGGTGGCCTAGATCATT
ATCTGCAATCAGTAGAAATAATGGTCATGCTAGATACCTTGAGGACGATTAATAATCCTCTTAATGATTATGCCCTTGTG
GCCTTACTTAAATCCCCAATGTTTGCCTTTGATGAGGACCAGTTAGCACGAATAGCTTTACAGGAATCTAGGCAAGACAA
AGTGGAAAGTTTCTATGAGAAGATTCAAAACGCTTTATCCAAGAAAGGTCTTTATCCAGACTTAGTAACCAACGACTTAC
AAGAGAGTCTAATAAGATTTGACAAGATTTTAAAGCAATGGCGACTTTTTGCGAAGAAGAATAGTTTGTATGATTTAATT
TGGAAAATCTATAATGATCGTTTTTACTTTGATTATGTGGCTACCAGTCCTAAGGCAGAACAGGCGCAAGCTAACCTATA
TGCTCTAGCATTAAGGGCCAGTCAATTTGAAAAGACAGGTTATAGAGGTTTGTCGCGCTTTATCTCCATGATCGATAGGA
TTTTAGAAACGGAAAATGACCTGGCTGATGTTGATATTGTTCAGGCTAAAGATGCTGTCAATTTGATGACGATTCATAAA
TCGAAGGGGTTAGAATTCAAGTATGTATTTATATTAAACTGTGATAAAAAGTTTAGTTTTAAGGATTTATACGCGCCAGC
TATTCTTGACCGTCAGCAGGGGATAGGTATTAAATATTTAGCTGATTTTAAAACTCTTTTGGATGCAGAGCAATTATCAA
GCTTAAAGGTTACTTTAGAAACGCTTCCTTATCAGATGAATAGAAAAGCCTTGAAGCGAGCTACTCTTTCAGAGCAGATG
CGCCTGCTTTACGTTGCGATGACTAGGGCGGAAAAGAAGCTATATTTGATTGGTAAGGGAAGTCAAGAGAAGTTAGCTGA
TAAGTATGATGGGCAAAGAGAAGGAAATCATTTGCCTAGGACAGTGCGTGAAAATCTCCAAAGTTTCCAAGATTGGTTTT
TAGCTATTCGAGAAAGTTTTGCCCAAGAAGAACTTTATTTTGATCTCCGTTTTGAAAGTGATAGTGATTTAGGAGATGAC
GCTATTGGCCAATTAGTCGTAAAAGAGGTTTTAGATCCTGATAATTTGGCCCATAATAGACAATCTGACCATATTGCGCG
TGCTTTAGATATGTTAGAAAAAGTTAATCAGTTAAACCAGTCTTATCATGCAGCTATTCATTTACCAACAGTTCAAACAC
CGAGTCAGCTTAAAGACTTTTATCAGCCAATTATGGACTCTGAAGGAGTTGCTGTTATAGAAAAAAGCCGACCTTTGAGT
CAAGCATCGTTTGTCTTACCAAATTTTAGTGAAAATCTTACTATTGATGCTAGCCAAATTGGATCAAGCTTACATGAATT
GATGCAAAAAATCACGATTTCAGAAAGAGTGACACAAGAAAGTGTTCGAAAGGCTTTGACCCTGGTTAATGCTAGTGAGT
CCCTTAAAGCTAAGCTGGATCTTGACAAGATTATTCAGTTCTTCAACCAGACTGCCCTTGGTCAACTAATCTGTAATCAC
CATCAGAAGCTCCATCGTGAAGCGCCGTTTGCTATGCTCAAAAAGGACATGCTTAGTCAAGAAAAGTTTGTGGTTCGTGG
CATTATTGATGGTTACTTGCTGTTTAAGGATAAAATTATTCTCTTTGATTACAAGACTGATAAATATCACCAGGCAAGTG
AGCTAGAGAGAAGGTATGCAGGTCAACTAGCCTTATATGCAGAAGCTTTGTCACAAGCTTATAATATTGACACTGTCGAA
AAGTATCTTGTTTTATTGGGAGGAGAAGATCTAGAAGTGATTTCTGTCTTGTAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1052-1193)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K6R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.445

100

0.513