Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EL147_RS02250 Genome accession   NZ_LR134341
Coordinates   458191..460395 (-) Length   734 a.a.
NCBI ID   WP_007893162.1    Uniprot ID   G5KAU8
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 453191..465395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS02220 - 453784..454604 (-) 821 Protein_436 ZIP family metal transporter -
  EL147_RS02225 (NCTC13786_00452) - 454619..455407 (-) 789 WP_007893051.1 Nif3-like dinuclear metal center hexameric protein -
  EL147_RS02230 (NCTC13786_00453) - 455397..456083 (-) 687 WP_007893404.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  EL147_RS02235 (NCTC13786_00454) nth 456153..456803 (-) 651 WP_007893371.1 endonuclease III -
  EL147_RS02240 (NCTC13786_00455) - 456800..457483 (-) 684 WP_007893172.1 DnaD domain-containing protein -
  EL147_RS02245 (NCTC13786_00456) - 457547..458065 (-) 519 WP_007893330.1 adenine phosphoribosyltransferase -
  EL147_RS02250 (NCTC13786_00457) recJ 458191..460395 (-) 2205 WP_007893162.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EL147_RS02255 (NCTC13786_00458) - 460392..461156 (-) 765 WP_007893412.1 SDR family oxidoreductase -
  EL147_RS02260 (NCTC13786_00459) rnz 461153..462085 (-) 933 WP_007893193.1 ribonuclease Z -
  EL147_RS02265 (NCTC13786_00460) - 462091..462732 (-) 642 WP_007893401.1 hypothetical protein -
  EL147_RS02270 (NCTC13786_00461) hflX 462725..463963 (-) 1239 WP_100068856.1 GTPase HflX -
  EL147_RS02275 (NCTC13786_00462) miaA 464054..464944 (-) 891 WP_007893294.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  EL147_RS02280 (NCTC13786_00463) - 465078..465254 (+) 177 WP_007893139.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 81822.86 Da        Isoelectric Point: 4.4981

>NTDB_id=1002067 EL147_RS02250 WP_007893162.1 458191..460395(-) (recJ) [Streptococcus pseudoporcinus strain NCTC13786]
MIKAKYQWEIQEEKPDSGFFQLAKKEGLSPESAQILYERGIQTPEQVGAFLHADLSQLHDPYLLNDMEKAVTRIRLAIEK
GETILVYGDYDADGMTSASIMKETLEMMGAEVRVYLPNRFTDGYGPNLSVYKYFIQQEAISLIITVDNGVSGHEAIAFAQ
AQGVDVIVTDHHGLPDTLPEAFAIIHPEHPDADYPFKYLAGCGVAFKLATALLEGVPAEFLDLVAIGTVADMVSLQGENR
ILVKNGLSILRQTERLGLQELMALADVDLDQFNEDVIGFKIAPQLNALGRLDDPNPAIDLLTGFDEEEALAIAELVNLKN
EERKTLVQTIYDEALQMVDLSKPVQVLAKEGWHPGVLGIVAGRIMEEISQTVIVLNCEDGYAKGSARSIDAINIFEALNA
KRELMTAFGGHAGAAGMTLPVDNLDALSQALSEFIEENQIDCNQKNSLTVDAILDLEHLSIDLLRSLQSIGPFGMGNPKP
VFLVKDFQLGQARTLGSHNAHLKLRLQKGPVATDLLAFNQGHLLQDFQQARGLELLVTLSVNSWNGKTTLQLILVDARVT
GLQLIDIRAKSAGIPERVPLYSEDPFNEEIVLDKVPDDQMALKKAFQKQDYKQIYFKNIIEKPYYLTGYGSKEQFARLYK
TIYQFPEFDVRFKLQELSDYLKIDKILLVKMIQIFQELDFVTISDGLMSVNKDATKRDIAESRIYQDLKSLVKFQELMAL
ARPEDIYAFLMGLD

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=1002067 EL147_RS02250 WP_007893162.1 458191..460395(-) (recJ) [Streptococcus pseudoporcinus strain NCTC13786]
ATGATAAAAGCGAAGTATCAATGGGAAATACAAGAAGAGAAGCCAGATTCTGGCTTTTTTCAACTTGCCAAAAAAGAAGG
ATTATCCCCAGAAAGCGCACAAATTCTTTATGAGCGTGGGATTCAGACACCTGAGCAAGTAGGGGCCTTCTTACATGCTG
ATTTATCTCAGTTACATGATCCCTATTTGCTTAATGATATGGAAAAAGCTGTGACCAGAATCCGACTAGCCATTGAAAAG
GGCGAAACGATTTTAGTCTATGGTGATTATGACGCAGATGGTATGACTTCAGCTTCTATCATGAAAGAAACCCTTGAAAT
GATGGGAGCTGAGGTAAGGGTTTACCTACCAAATCGTTTTACGGACGGCTATGGGCCCAACCTTAGCGTTTACAAGTATT
TTATCCAGCAGGAAGCTATCTCTCTCATTATAACAGTTGATAATGGTGTTTCTGGTCATGAGGCAATAGCTTTCGCGCAA
GCCCAGGGAGTTGATGTTATCGTGACGGATCATCATGGTCTTCCCGATACTTTGCCAGAAGCCTTCGCGATTATCCACCC
AGAGCATCCGGACGCTGATTACCCTTTTAAATACCTAGCTGGCTGTGGCGTTGCTTTCAAATTAGCAACAGCTCTGCTAG
AAGGGGTTCCGGCAGAATTTTTAGATTTGGTCGCAATTGGAACAGTAGCTGATATGGTTAGTCTTCAGGGCGAAAATCGT
ATTTTGGTTAAAAATGGTCTGTCTATTTTACGTCAGACTGAGCGGCTTGGTCTTCAAGAATTAATGGCCTTAGCTGATGT
GGATCTTGATCAATTTAATGAAGATGTTATTGGCTTTAAAATTGCACCTCAGTTAAATGCTTTAGGCCGTCTTGACGATC
CTAATCCAGCCATTGACTTATTAACTGGATTTGATGAAGAAGAAGCTCTAGCTATTGCTGAACTGGTTAACCTTAAAAAT
GAGGAACGAAAGACACTTGTTCAAACCATTTATGATGAAGCTTTACAAATGGTTGATCTTAGTAAGCCTGTTCAGGTTCT
GGCAAAAGAAGGCTGGCATCCAGGTGTTTTGGGGATAGTTGCTGGTCGCATTATGGAGGAGATTAGTCAGACTGTTATTG
TTTTAAATTGTGAAGATGGTTACGCTAAAGGTTCAGCTCGTAGCATTGATGCAATCAACATTTTTGAAGCCTTAAATGCT
AAGCGGGAATTGATGACAGCATTTGGAGGTCATGCTGGGGCAGCTGGAATGACTTTGCCTGTCGACAATTTAGACGCTTT
GTCCCAGGCACTTAGTGAGTTTATTGAAGAAAATCAAATTGATTGTAACCAAAAAAATAGCTTAACTGTTGATGCTATCT
TAGATTTGGAGCATTTATCGATAGACCTCTTAAGAAGTCTACAGAGTATTGGTCCATTTGGTATGGGAAATCCTAAGCCC
GTTTTTCTAGTAAAAGATTTTCAGCTAGGTCAAGCTAGAACTCTAGGAAGCCATAATGCTCATCTCAAGCTTCGGCTTCA
AAAAGGCCCTGTAGCAACTGATCTCTTAGCCTTCAACCAAGGGCATTTACTACAAGATTTCCAACAAGCGAGAGGCTTAG
AACTTCTAGTAACCTTATCTGTTAACTCTTGGAACGGTAAGACCACTTTGCAATTGATATTGGTAGATGCACGGGTTACT
GGCCTCCAGTTGATTGATATTCGTGCTAAAAGTGCAGGCATACCAGAGAGAGTACCGCTATATTCTGAAGACCCTTTCAA
TGAGGAAATTGTCCTTGATAAGGTTCCTGATGATCAGATGGCTTTAAAAAAGGCTTTTCAAAAACAAGATTACAAGCAGA
TTTACTTTAAAAACATCATTGAGAAACCTTATTATTTAACAGGTTATGGCAGTAAGGAGCAATTTGCTCGCCTTTATAAA
ACTATTTATCAATTCCCTGAGTTTGATGTGCGTTTTAAATTACAAGAATTGAGTGACTACTTGAAAATTGACAAAATCTT
GTTGGTGAAAATGATTCAAATTTTCCAAGAATTAGATTTTGTAACTATTAGTGATGGCCTAATGTCAGTTAATAAAGATG
CTACTAAGAGAGACATTGCTGAAAGTCGCATTTATCAAGACTTAAAAAGTTTGGTTAAATTTCAAGAATTGATGGCGCTA
GCAAGACCAGAAGACATTTATGCATTTTTGATGGGACTGGATTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(319-435)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KAU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

62.687

100

0.629
  recJ Bacillus subtilis subsp. subtilis str. 168

35.438

100

0.375