Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABFY19_RS00855 Genome accession   NZ_CP156677
Coordinates   180189..181553 (+) Length   454 a.a.
NCBI ID   WP_418791390.1    Uniprot ID   -
Organism   Phosphitispora sp. TUW77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 175189..186553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFY19_RS00840 (ABFY19_00840) - 175991..176503 (+) 513 WP_418791387.1 UvrB/UvrC motif-containing protein -
  ABFY19_RS00845 (ABFY19_00845) - 176515..177573 (+) 1059 WP_418791388.1 protein arginine kinase -
  ABFY19_RS00850 (ABFY19_00850) - 177592..180033 (+) 2442 WP_418791389.1 ATP-dependent Clp protease ATP-binding subunit -
  ABFY19_RS00855 (ABFY19_00855) radA 180189..181553 (+) 1365 WP_418791390.1 DNA repair protein RadA Machinery gene
  ABFY19_RS00860 (ABFY19_00860) disA 181550..182629 (+) 1080 WP_418791391.1 DNA integrity scanning diadenylate cyclase DisA -
  ABFY19_RS00865 (ABFY19_00865) - 182709..183104 (-) 396 WP_418791392.1 DUF1573 domain-containing protein -
  ABFY19_RS00870 (ABFY19_00870) - 183302..183778 (+) 477 WP_418791393.1 CarD family transcriptional regulator -
  ABFY19_RS00875 (ABFY19_00875) - 183982..185118 (+) 1137 WP_418791394.1 PIN/TRAM domain-containing protein -
  ABFY19_RS00880 (ABFY19_00880) ispD 185111..185809 (+) 699 WP_418791395.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABFY19_RS00885 (ABFY19_00885) ispF 185806..186279 (+) 474 WP_418791396.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48710.23 Da        Isoelectric Point: 7.2905

>NTDB_id=1002039 ABFY19_RS00855 WP_418791390.1 180189..181553(+) (radA) [Phosphitispora sp. TUW77]
MAKIRTRFICTECGHEEFKWYGRCPGCGTWNSFSEEINTKKTKSGLKQPVSQPLSITKVSDISEERVITGIAELDRVLGG
GIVPGSLVLIGGDPGIGKSTIAIQAASVVAKERGITLYVTAEESVRQIKMRAARLGAVAEKLFVAAETSLEQILIYIQSL
SPKLVIIDSIQTIFREEIPSAPGSVVQVRECTYSLMQEAKTRNVPVFIVGHVTKEGSIAGPRVLEHIVDAVLYFEGERNH
SFRILRAVKNRFGSTNEIGVFEMGDQGLAEVTNPSQIFLAERPTGVSGSVVIAGIEGTRPVLVEIQALVSASSFGNPRRM
TSGVDYNRLNLILAVLEKRVGLHLGSQDTYVNAAGGVKLDEPAVDLGIAVALASSFRDIPVEPSTIVLGEIGLTGEVRAI
SQAAKRIHEGTKLGFCNFVIPVANCTQCKDIPGVNIVGVKTVNEAFETALGVKI

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1002039 ABFY19_RS00855 WP_418791390.1 180189..181553(+) (radA) [Phosphitispora sp. TUW77]
GTGGCGAAAATAAGAACCAGGTTTATTTGTACCGAATGCGGTCATGAAGAATTTAAGTGGTATGGGCGATGTCCGGGTTG
TGGCACATGGAATTCCTTTTCTGAGGAAATAAATACAAAGAAAACAAAAAGCGGGCTAAAGCAGCCTGTTTCACAGCCGC
TGTCGATAACCAAAGTATCGGATATCTCCGAAGAACGGGTGATTACCGGGATAGCAGAGCTGGACAGGGTTCTGGGAGGC
GGTATTGTACCCGGTTCATTAGTTCTGATTGGGGGCGATCCTGGGATTGGAAAATCAACTATTGCCATCCAGGCCGCATC
AGTTGTAGCAAAAGAGCGGGGCATTACTCTTTATGTTACTGCTGAAGAGTCTGTCAGGCAGATTAAGATGAGGGCAGCCA
GGCTTGGGGCTGTTGCAGAAAAATTGTTTGTGGCAGCTGAAACCTCACTGGAGCAAATATTAATTTATATACAAAGTTTG
TCACCGAAACTTGTCATCATTGATTCTATCCAGACAATTTTTCGGGAGGAAATTCCATCAGCTCCTGGAAGTGTTGTTCA
GGTTCGGGAATGCACCTATTCTCTTATGCAGGAGGCTAAGACCAGAAATGTTCCTGTTTTTATAGTAGGTCACGTAACTA
AAGAGGGGTCTATTGCAGGACCCAGAGTTTTGGAACATATAGTTGATGCGGTCCTATATTTTGAAGGGGAACGCAATCAC
AGTTTTCGAATTTTGAGGGCAGTCAAAAACCGCTTTGGTTCCACTAATGAGATTGGGGTTTTTGAGATGGGAGACCAGGG
CTTGGCAGAAGTGACGAATCCATCCCAAATATTCCTTGCTGAGCGGCCTACCGGTGTTTCGGGCTCAGTTGTGATAGCGG
GTATCGAGGGAACCAGGCCTGTGCTGGTTGAAATACAGGCGCTGGTAAGTGCAAGCAGCTTTGGCAACCCTAGGAGGATG
ACCAGCGGGGTTGATTATAACCGGTTAAATTTGATTTTAGCAGTTTTGGAAAAGAGGGTAGGACTGCATTTGGGTAGTCA
AGATACATATGTTAATGCGGCAGGAGGTGTCAAGTTGGACGAGCCTGCAGTTGATTTGGGTATTGCTGTTGCCTTGGCCT
CCAGTTTCAGGGATATCCCGGTTGAACCGTCAACAATAGTTTTAGGTGAAATAGGTCTTACCGGGGAAGTGAGGGCAATA
AGCCAGGCGGCTAAGAGAATACATGAGGGGACGAAACTGGGTTTTTGCAATTTTGTCATTCCTGTGGCTAACTGTACCCA
GTGTAAGGATATCCCGGGCGTCAATATAGTTGGTGTGAAAACAGTTAATGAGGCATTTGAGACAGCATTGGGGGTGAAGA
TTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(59-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.674

100

0.57
  radA Streptococcus mitis NCTC 12261

52.444

99.119

0.52
  radA Streptococcus mitis SK321

52.444

99.119

0.52
  radA Streptococcus pneumoniae Rx1

52.444

99.119

0.52
  radA Streptococcus pneumoniae D39

52.444

99.119

0.52
  radA Streptococcus pneumoniae R6

52.444

99.119

0.52
  radA Streptococcus pneumoniae TIGR4

52.444

99.119

0.52

Multiple sequence alignment