Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BAMY6639_RS14555 Genome accession   NZ_CP006058
Coordinates   3001883..3002599 (+) Length   238 a.a.
NCBI ID   WP_061861260.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2996883..3007599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS14525 (BAMY6639_15250) - 2997063..2997440 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  BAMY6639_RS14530 (BAMY6639_15255) - 2997450..2997881 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  BAMY6639_RS14535 (BAMY6639_15260) - 2997897..2998139 (-) 243 WP_003155595.1 spore germination protein -
  BAMY6639_RS14540 (BAMY6639_15265) - 2998154..2998414 (-) 261 WP_014417185.1 spore germination protein -
  BAMY6639_RS14545 (BAMY6639_15270) treP 2998685..3000100 (+) 1416 WP_061861258.1 PTS system trehalose-specific EIIBC component -
  BAMY6639_RS14550 (BAMY6639_15275) treC 3000176..3001861 (+) 1686 WP_061861259.1 alpha,alpha-phosphotrehalase -
  BAMY6639_RS14555 (BAMY6639_15280) treR 3001883..3002599 (+) 717 WP_061861260.1 trehalose operon repressor Regulator
  BAMY6639_RS14560 (BAMY6639_15285) - 3002732..3003397 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  BAMY6639_RS14565 (BAMY6639_15290) - 3003433..3004194 (-) 762 WP_007408500.1 YibE/F family protein -
  BAMY6639_RS14570 (BAMY6639_15295) - 3004191..3005330 (-) 1140 WP_007408501.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27470.47 Da        Isoelectric Point: 7.3802

>NTDB_id=100202 BAMY6639_RS14555 WP_061861260.1 3001883..3002599(+) (treR) [Bacillus amyloliquefaciens UMAF6639]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=100202 BAMY6639_RS14555 WP_061861260.1 3001883..3002599(+) (treR) [Bacillus amyloliquefaciens UMAF6639]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424

Multiple sequence alignment