Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EL140_RS04920 Genome accession   NZ_LR134336
Coordinates   958432..959502 (+) Length   356 a.a.
NCBI ID   WP_000817856.1    Uniprot ID   A0A1X1HU81
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 953432..964502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS04870 (NCTC11427_00956) - 953642..954085 (+) 444 WP_000606019.1 hypothetical protein -
  EL140_RS04875 (NCTC11427_00957) - 954085..954450 (+) 366 WP_000231744.1 hypothetical protein -
  EL140_RS04880 (NCTC11427_00958) - 954492..954926 (+) 435 WP_001065611.1 hypothetical protein -
  EL140_RS04885 (NCTC11427_00959) - 954926..955150 (+) 225 WP_001046261.1 hypothetical protein -
  EL140_RS04890 (NCTC11427_00960) - 955151..955594 (+) 444 WP_001065543.1 hypothetical protein -
  EL140_RS09740 (NCTC11427_00962) - 955721..955930 (+) 210 WP_232007600.1 hypothetical protein -
  EL140_RS04900 (NCTC11427_00963) - 955972..956394 (+) 423 WP_001065607.1 hypothetical protein -
  EL140_RS04905 (NCTC11427_00964) - 956394..957647 (+) 1254 WP_000144639.1 type II toxin-antitoxin system RelE family toxin -
  EL140_RS04910 (NCTC11427_00965) - 957629..958021 (+) 393 WP_000439964.1 hypothetical protein -
  EL140_RS04915 (NCTC11427_00966) - 958002..958292 (+) 291 WP_001148764.1 hypothetical protein -
  EL140_RS04920 (NCTC11427_00967) xerS 958432..959502 (+) 1071 WP_000817856.1 tyrosine recombinase XerS Machinery gene
  EL140_RS04925 (NCTC11427_00969) - 959581..960222 (-) 642 WP_000890071.1 hypothetical protein -
  EL140_RS04930 (NCTC11427_00970) - 960327..961316 (-) 990 WP_000874011.1 lipoate--protein ligase -
  EL140_RS04935 (NCTC11427_00971) lpdA 961509..963215 (-) 1707 WP_001162885.1 dihydrolipoyl dehydrogenase -
  EL140_RS04940 (NCTC11427_00972) - 963260..964303 (-) 1044 WP_000752719.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41184.31 Da        Isoelectric Point: 9.6031

>NTDB_id=1002004 EL140_RS04920 WP_000817856.1 958432..959502(+) (xerS) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDME
AFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDLGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1002004 EL140_RS04920 WP_000817856.1 958432..959502(+) (xerS) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
CAAGCTTGCTGTGCCCTACAGTTTTACAACCTTGTACGAATATCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTAG
AGTCTGGAATTTCAAATGCTGATAAAATGTCTGATATTCCTTTATCTGTCTTGGAAAATATGTCTAAGAAAGATATGGAA
GCTTTTATCCTATATCTACGTGAACGTCCATTGCTGAATGCTAATACAACCAAGCAAGGTGTATCTCAGACGACCATCAA
TCGGACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACAGAGGAGGTTGAAAACGACCTGGGAGAACCCTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACCAAGAAAAAGAAAGAAACACTTGCTGCTAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAGGAGTACCCACAACAGCTCTCAAATCGCGCTCT
CTCATCATTTAATAAGAACAAAGAACGTGATTTAGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATTTGGATCTAAGGGACCTTAATCTCAAAATGATGGTGATCGATGTCACTCGAAAAGGGGGGAAACGTGATTCT
GTCAATGTCGCTGCTTTTGCTAAGCCTTACCTAGAGAATTATCTAGCCATTCGAAATCAACGCTATAAGACGGAAAAGAC
AGATACAGCTCTCTTTTTGACCTTATATCGAGGCGTTCCCAATCGTATTGATGCTTCTAGTGTTGAAAAGATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCACACAAACTACGCCATACCCTGGCGACTAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCATCAGCTAGGACATGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1HU81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986