Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABFI50_RS16845 Genome accession   NZ_CP156673
Coordinates   3621233..3621859 (+) Length   208 a.a.
NCBI ID   WP_032637053.1    Uniprot ID   A0AAJ6MNH4
Organism   Enterobacter sp. HNDS-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616233..3626859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFI50_RS16825 (ABFI50_16825) - 3616631..3618391 (-) 1761 WP_014883250.1 Lon protease family protein -
  ABFI50_RS16830 (ABFI50_16830) matP 3618578..3619030 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  ABFI50_RS16835 (ABFI50_16835) ompA 3619095..3620150 (-) 1056 WP_014883252.1 porin OmpA -
  ABFI50_RS16840 (ABFI50_16840) sulA 3620506..3621015 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  ABFI50_RS16845 (ABFI50_16845) sxy/tfoX 3621233..3621859 (+) 627 WP_032637053.1 TfoX/Sxy family DNA transformation protein Regulator
  ABFI50_RS16850 (ABFI50_16850) yccS 3621816..3623978 (-) 2163 WP_179120688.1 YccS family putative transporter -
  ABFI50_RS16855 (ABFI50_16855) - 3623998..3624444 (-) 447 WP_014883256.1 YccF domain-containing protein -
  ABFI50_RS16860 (ABFI50_16860) helD 3624568..3626622 (+) 2055 WP_248082103.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23930.53 Da        Isoelectric Point: 9.0691

>NTDB_id=1001990 ABFI50_RS16845 WP_032637053.1 3621233..3621859(+) (sxy/tfoX) [Enterobacter sp. HNDS-6]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAIDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1001990 ABFI50_RS16845 WP_032637053.1 3621233..3621859(+) (sxy/tfoX) [Enterobacter sp. HNDS-6]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGATAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGTTAATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.143

97.596

0.558

Multiple sequence alignment