Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EL140_RS02335 Genome accession   NZ_LR134336
Coordinates   467116..469335 (+) Length   739 a.a.
NCBI ID   WP_004181076.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462116..474335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS02310 (NCTC11427_00451) - 463105..463887 (-) 783 WP_000581071.1 DUF4037 domain-containing protein -
  EL140_RS02315 (NCTC11427_00452) - 464017..464676 (-) 660 WP_000443852.1 amino acid ABC transporter permease -
  EL140_RS02320 (NCTC11427_00453) - 464686..465363 (-) 678 WP_000131163.1 amino acid ABC transporter permease -
  EL140_RS02325 (NCTC11427_00454) - 465376..466170 (-) 795 WP_000726183.1 transporter substrate-binding domain-containing protein -
  EL140_RS02330 (NCTC11427_00455) - 466181..466939 (-) 759 WP_001229587.1 amino acid ABC transporter ATP-binding protein -
  EL140_RS02335 (NCTC11427_00456) recJ 467116..469335 (+) 2220 WP_004181076.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EL140_RS02340 (NCTC11427_00457) - 469503..470150 (+) 648 WP_000754473.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -
  EL140_RS02345 (NCTC11427_00458) - 470651..472312 (+) 1662 WP_000065612.1 ribonuclease J -
  EL140_RS02350 (NCTC11427_00459) - 472381..473160 (+) 780 WP_000290055.1 alpha/beta hydrolase -
  EL140_RS02355 (NCTC11427_00460) - 473265..473966 (+) 702 WP_000498556.1 M57 family metalloprotease -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82476.96 Da        Isoelectric Point: 4.3078

>NTDB_id=1001985 EL140_RS02335 WP_004181076.1 467116..469335(+) (recJ) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILIYGDYDADGMTSASIIKESLEQLGAECRVHLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDDRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFQVESARTMGAGNAHLKLKISKGEATFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GIQLFNIRGKNAVLPEGVPVLDFSGELPDLATSDAVVVKTIPEDITLLKTIFQEQDFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQKLKQTVKD
QEMMALGTVQEIYDFLMEK

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1001985 EL140_RS02335 WP_004181076.1 467116..469335(+) (recJ) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGGATGAAGAAAGTCTAAAGAAGTTTTTAGAACCTT
CTTTAGAGGATTTACATGACCCCTATCTGCTCCATGATATGGATAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAAATATTCTCATTTATGGAGACTACGATGCGGATGGCATGACTTCGGCTTCTATTATTAAGGAAAGTTTAGAACA
GCTTGGCGCCGAGTGCCGTGTTCACCTACCCAATCGTTTTACCGATGGCTATGGTCCCAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAGGGAATTTCCTTGATTGTGACAGTGGATAATGGAGTTGCTGGTCACGAGGCCATTGAATTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACTGACCACCATTCCATGCCGGAAACCCTTCCTGATGCCTATGCGATTGTTCACCC
TGAACATCCAGATGCGGACTATCCTTTCAAACAGTTGGCCGGATGCGGAGTGGCTTTCAAGCTAGCTTGCGCTCTTTTAG
AAGAAGTGCAAGTGGAGCTACTCGATTTGGTCGCTATCGGAACCATTGCAGATATGGTGAGTTTGACGGATGAGAATCGC
ATTTTGGTCCAATATGGTCTGGAGATGCTGGGGCATACTCAGCGTATTGGTCTACAAGAAATGCTGGATATGGCTGGGAT
TGCTGCTAATGAAGTAACGGAAGAAACGGTTGGCTTTCAGATTGCCCCTCGTTTAAATGCCTTGGGGCGATTGGATGATC
CCAATCCTGCCATTGATTTGCTGACTGGGTTTGACGACGAGGAAGCTCATGAGATTGCCCTCATGATTCACCAGAAAAAT
GAAGAGCGCAAGGAAATCGTTCAGTCAATCTATGAAGAAGCTAAGACCATGGTGGATCCTGAGAAGAAGGTCCAGGTCTT
GGCAAAGGAAGGCTGGAATCCTGGCGTTCTGGGTATCGTTGCTGGTCGTTTGTTGGAAGAACTAGGGCAGACAGTCATCG
TTCTTAATATAGAAGATGATCGTGCCAAGGGTAGCGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCCTTGGATCCC
CACCGAGATCTCTTCATCGCATTCGGTGGCCATGCTGGTGCAGCAGGAATGACGCTGGAAGTGGAGAAACTCTCAGATTT
ATCTCAGGTCCTAGAAGATTATATCCGTGAAAAAGGCGCAGATGCTAGTGGTAAGAATAAGTTAAATCTAGATGAAGAGT
TGGACTTGGAGACTCTTAGCCTGGAAACGGTTAAAAGTTTTGAACGCTTGGCACCCTTTGGAATGGACAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCAGGTCGAAAGTGCCCGTACCATGGGGGCAGGCAATGCCCATCTCAAGCTGAAAATTTC
CAAGGGTGAGGCGACTTTTGAAGTGGTGGCCTTTGGACAAGGTAGATGGGCGACAGAGTTTGCTCAAACAAAAAACCTAG
AATTGGCAGTTACCTTGTCTGTCAATCAATGGAATGGTCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAG
GGTATTCAACTCTTTAACATTCGTGGGAAGAATGCAGTCTTGCCAGAAGGGGTTCCAGTCTTGGATTTTTCTGGTGAGTT
GCCAGATCTAGCGACTAGTGACGCGGTTGTTGTGAAAACCATTCCCGAGGATATTACCCTGCTGAAGACCATTTTTCAGG
AACAGGATTTCTCTGCTGTCTATTTCAAAAATGACATCGATAAGGCCTACTATCTGACAGGTTACGGGACTAGAGAACAG
TTTGCAAAATTGTACAAGACCATTTACCAGTTTCCAGAGTTTGATATTCGCTACAAGCTGAAAGATCTGGCGGCTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATTCAAGTATTTGAGGAACTGGGCTTTGTAACGATCAAAGATGGTGTCA
TGACAGTCAATAAAGAAGCGCCAAAGAGGGAGATTGGAGAAAGTCAGATATACCAAAAACTTAAACAAACCGTCAAAGAT
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATATATGACTTTTTGATGGAAAAATAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

96.211

100

0.962
  recJ Bacillus subtilis subsp. subtilis str. 168

36.528

100

0.382