Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EL140_RS00165 Genome accession   NZ_LR134336
Coordinates   29612..30382 (+) Length   256 a.a.
NCBI ID   WP_000616141.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24612..35382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS00140 (NCTC11427_00027) - 25022..25516 (+) 495 WP_002875379.1 beta-class carbonic anhydrase -
  EL140_RS00145 (NCTC11427_00028) - 25730..26698 (+) 969 WP_000010177.1 ribose-phosphate diphosphokinase -
  EL140_RS00150 (NCTC11427_00029) - 26818..27255 (+) 438 WP_000076475.1 CoA-binding protein -
  EL140_RS00155 (NCTC11427_00030) - 27284..28294 (-) 1011 WP_000009125.1 YeiH family protein -
  EL140_RS00160 (NCTC11427_00031) - 28446..29615 (+) 1170 WP_000366327.1 pyridoxal phosphate-dependent aminotransferase -
  EL140_RS00165 (NCTC11427_00032) recO 29612..30382 (+) 771 WP_000616141.1 DNA repair protein RecO Machinery gene
  EL140_RS00170 (NCTC11427_00033) plsX 30379..31371 (+) 993 WP_000717449.1 phosphate acyltransferase PlsX -
  EL140_RS00175 (NCTC11427_00034) - 31377..31613 (+) 237 WP_000136451.1 acyl carrier protein -
  EL140_RS00180 (NCTC11427_00035) - 32054..32242 (+) 189 WP_000180830.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  EL140_RS00185 (NCTC11427_00036) - 32260..32427 (+) 168 WP_000415691.1 bacteriocin -
  EL140_RS00190 (NCTC11427_00037) - 32437..32625 (+) 189 WP_000722235.1 hypothetical protein -
  EL140_RS00200 (NCTC11427_00038) comA 33060..35213 (+) 2154 WP_000672141.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29779.24 Da        Isoelectric Point: 5.1762

>NTDB_id=1001949 EL140_RS00165 WP_000616141.1 29612..30382(+) (recO) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPDHYHEDEKRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKKELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1001949 EL140_RS00165 WP_000616141.1 29612..30382(+) (recO) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGATCCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTGGTCAAAATTTT
TACCGAGCAGGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAATCCAAACTAGCTCCTGTTATTCAGCCCTTGG
TGTTGGCACGGTTTCTCTTACGAATCAATGATGACGGCCTTAGCTACATCGAGGACTACCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTTTTTGTCATGGCCTATGCTACCTATGTGGCTGCCCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGAAAGACTCTGGAGTTGATGGAAGCAGGCATAGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCCTTTGACTTTTCTTTCAAATATGGAGCCTGCCTATGTCCAGACCATTACCATGAGGACGAGAAACGTTGTCATCT
AAATCCCAACATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACTATTTCGCTTAAGGCCG
AAATCAAGAAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.094

100

0.961