Detailed information NTG1001915

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABDB91_RS11660
• Genome accession: NZ_CP156660
• Coordinates: 2428457..2429398 (-)
• Length: 313 a.a.
• NCBI ID: WP_347487890.1
• Uniprot ID: -
• Organism: Desulfoscipio sp. XC116
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2423457..2434398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDB91_RS11625 (ABDB91_11625)	-	2424152..2424282 (-)	131	Protein_2261	signal recognition particle-docking protein FtsY	-
ABDB91_RS11630 (ABDB91_11630)	-	2424628..2425089 (+)	462	WP_347487885.1	hypothetical protein	-
ABDB91_RS11635 (ABDB91_11635)	-	2425263..2426441 (+)	1179	WP_347487886.1	copper amine oxidase N-terminal domain-containing protein	-
ABDB91_RS11640 (ABDB91_11640)	-	2426502..2426738 (+)	237	WP_347491588.1	hypothetical protein	-
ABDB91_RS11645 (ABDB91_11645)	-	2426925..2427416 (+)	492	WP_347487887.1	hypothetical protein	-
ABDB91_RS11650 (ABDB91_11650)	-	2427460..2428074 (+)	615	WP_347487888.1	hypothetical protein	-
ABDB91_RS11655 (ABDB91_11655)	-	2428117..2428317 (+)	201	WP_347487889.1	accessory gene regulator B family protein	-
ABDB91_RS11660 (ABDB91_11660)	pilA	2428457..2429398 (-)	942	WP_347487890.1	signal recognition particle-docking protein FtsY	Machinery gene
ABDB91_RS11665 (ABDB91_11665)	rnc	2429506..2430204 (-)	699	WP_347487891.1	ribonuclease III	-
ABDB91_RS11670 (ABDB91_11670)	fabF	2430207..2431460 (-)	1254	WP_347487892.1	beta-ketoacyl-ACP synthase II	-
ABDB91_RS11675 (ABDB91_11675)	acpP	2431545..2431778 (-)	234	WP_347487893.1	acyl carrier protein	-
ABDB91_RS11680 (ABDB91_11680)	fabG	2431833..2432576 (-)	744	WP_347487894.1	3-oxoacyl-ACP reductase FabG	-
ABDB91_RS11685 (ABDB91_11685)	fabD	2432578..2433513 (-)	936	WP_347487895.1	ACP S-malonyltransferase	-

Sequence

Protein

• Length: 313 a.a.
• Molecular weight: 33550.55 Da
• Isoelectric Point: 5.1681

>NTDB_id=1001915 ABDB91_RS11660 WP_347487890.1 2428457..2429398(-) (pilA) [Desulfoscipio sp. XC116]
MGLFSKLKDGLSKTRKNFVEKIDAIVTGRKVIDEELYEELEEALIQADVGIDASLELVENLRSEVKKRRIGDPEELRAVL
KELIQGILGEETGSINIDGEQPAVIMVVGVNGVGKTTTIGKLAHYFKESGKSVLLSAADTFRAAAIDQLEIWGNRVGGAV
IKHSEGSDPAAVAFDSLQAARARKIDVLIVDTAGRLHTKSNLMEELKKVHRVLGREMPGAPHEVLLVLDATTGQNAISQA
RLFKEAVGVTGVALTKLDGTAKGGVVIAIKQGLDIPIKMIGVGEGIDDLRPFDAREFADALFVKDNQAAEQAG

Nucleotide

• Length: 942 bp

>NTDB_id=1001915 ABDB91_RS11660 WP_347487890.1 2428457..2429398(-) (pilA) [Desulfoscipio sp. XC116]
ATGGGTTTATTTAGTAAATTAAAGGATGGCCTGAGTAAAACCAGAAAAAATTTCGTGGAGAAAATTGATGCTATTGTCAC
CGGTCGCAAGGTTATCGATGAGGAACTATACGAGGAGCTGGAAGAAGCGTTGATCCAAGCCGACGTGGGCATTGACGCCT
CGTTGGAGCTGGTTGAAAACCTGCGCAGTGAAGTGAAAAAACGCCGGATTGGCGATCCCGAAGAATTACGGGCCGTGCTG
AAGGAGCTTATTCAAGGAATTCTGGGCGAAGAAACCGGCTCAATCAATATAGACGGCGAGCAGCCGGCGGTAATCATGGT
GGTGGGAGTTAACGGCGTGGGCAAAACTACGACCATTGGTAAACTGGCCCACTATTTTAAGGAAAGCGGCAAAAGTGTGC
TGCTAAGCGCCGCGGATACATTTCGGGCGGCGGCCATTGACCAGCTGGAAATATGGGGCAACCGGGTGGGGGGGGCCGTG
ATCAAGCACTCCGAGGGCTCAGATCCCGCCGCTGTGGCTTTTGATTCGCTGCAGGCCGCCCGGGCCAGGAAAATTGATGT
GCTTATCGTGGACACCGCGGGCCGGCTGCACACTAAGAGCAACTTGATGGAGGAATTGAAAAAGGTACACCGGGTGCTGG
GACGGGAAATGCCGGGCGCCCCTCATGAGGTGCTGCTGGTGCTGGACGCCACCACCGGGCAAAATGCCATCAGCCAGGCC
CGCCTTTTCAAAGAGGCGGTGGGGGTGACCGGGGTGGCCCTGACCAAACTGGACGGCACCGCCAAAGGCGGCGTGGTAAT
TGCTATTAAACAAGGTCTGGACATACCCATTAAAATGATCGGTGTCGGCGAAGGGATAGACGACTTGCGTCCTTTCGACG
CCCGGGAATTTGCCGATGCGCTGTTTGTAAAGGATAACCAAGCGGCGGAGCAGGCAGGATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (19-82)

• SRP54-type protein, GTPase domain (SRP54) (102-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.825	96.805	0.492