Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABDB91_RS01750 Genome accession   NZ_CP156660
Coordinates   373116..374465 (+) Length   449 a.a.
NCBI ID   WP_347489899.1    Uniprot ID   -
Organism   Desulfoscipio sp. XC116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 368116..379465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDB91_RS01730 (ABDB91_01730) - 368347..368817 (+) 471 WP_347489896.1 CtsR family transcriptional regulator -
  ABDB91_RS01735 (ABDB91_01735) - 368835..369368 (+) 534 WP_347489897.1 UvrB/UvrC motif-containing protein -
  ABDB91_RS01740 (ABDB91_01740) - 369358..370425 (+) 1068 WP_347489898.1 protein arginine kinase -
  ABDB91_RS01745 (ABDB91_01745) - 370434..372896 (+) 2463 WP_347491502.1 ATP-dependent Clp protease ATP-binding subunit -
  ABDB91_RS01750 (ABDB91_01750) radA 373116..374465 (+) 1350 WP_347489899.1 DNA repair protein RadA Machinery gene
  ABDB91_RS01755 (ABDB91_01755) disA 374513..375574 (+) 1062 WP_347489900.1 DNA integrity scanning diadenylate cyclase DisA -
  ABDB91_RS01760 (ABDB91_01760) - 375793..376191 (-) 399 WP_347489901.1 DUF1573 domain-containing protein -
  ABDB91_RS01765 (ABDB91_01765) - 376385..376861 (+) 477 WP_006522898.1 CarD family transcriptional regulator -
  ABDB91_RS01770 (ABDB91_01770) - 376995..378137 (+) 1143 WP_347489902.1 PIN/TRAM domain-containing protein -
  ABDB91_RS01775 (ABDB91_01775) ispD 378130..378813 (+) 684 WP_347489903.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABDB91_RS01780 (ABDB91_01780) ispF 378877..379362 (+) 486 WP_347491503.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 48520.17 Da        Isoelectric Point: 7.3299

>NTDB_id=1001904 ABDB91_RS01750 WP_347489899.1 373116..374465(+) (radA) [Desulfoscipio sp. XC116]
MTAKKTGYYCQECGHFTLRWMGRCAGCGAWNTYVEEVCAPARRRRAAECPEEPRPLIEVPPVDSERRSTGMAELNRVLGG
GLVPGSLILLGGDPGIGKSTLLLQVAGAVGSAGHRVLYVSGEESPQQIKLRADRLGVNGAELYVYPQTDLEDVEDQLVKV
NPLLVVVDSIQTMYLSHVASAPGSVSQVRECTARLMQLAKKQSVSIFVVGHVTKEGMIAGPRVMEHMVDVVLYFEGERRQ
TFRILRGVKNRFGSTNEIGVFEMSGAGLREVSNPSSFFLMDHVHRDMAGTVVVPTLEGTRPLLVEIQALVCPTSFGTPRR
MTAGVDHNRVALIMAVLEKRLGLMLGNCDAYVNVVGGVRIDEPAADLGIAMALASSFRERSIDGRMVIMGELGLTGEIRQ
VAAADKRIREAAQLGFGSCLAPRQKGLPKVSGLNILEAATLAEAFDLAF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1001904 ABDB91_RS01750 WP_347489899.1 373116..374465(+) (radA) [Desulfoscipio sp. XC116]
GTGACTGCAAAAAAAACCGGTTATTACTGCCAGGAGTGCGGTCATTTTACTCTCCGCTGGATGGGCCGTTGCGCCGGTTG
TGGGGCTTGGAACACTTATGTGGAAGAGGTTTGTGCACCTGCGCGGCGCCGCCGGGCGGCGGAGTGCCCGGAAGAGCCCC
GTCCTCTTATTGAAGTTCCGCCGGTGGACAGTGAACGCCGCTCTACAGGTATGGCTGAATTAAATCGTGTGCTGGGTGGC
GGTTTGGTGCCGGGTTCATTAATTTTACTGGGCGGTGATCCGGGCATTGGTAAATCCACTTTGCTTTTGCAGGTAGCCGG
CGCTGTTGGTTCCGCGGGTCACCGGGTGCTTTACGTATCGGGGGAAGAGTCACCCCAGCAAATTAAACTGCGTGCCGACC
GGCTTGGGGTAAACGGCGCCGAGCTTTACGTTTATCCCCAAACTGATCTGGAGGACGTGGAAGATCAGTTGGTTAAGGTG
AACCCTTTACTGGTGGTAGTGGATTCCATTCAGACTATGTACTTATCCCATGTTGCATCCGCCCCCGGCAGTGTGAGTCA
GGTGCGGGAGTGTACCGCCCGTCTTATGCAGCTGGCCAAAAAACAGTCGGTATCTATTTTTGTTGTGGGGCATGTAACCA
AGGAGGGGATGATTGCCGGTCCCCGGGTGATGGAGCACATGGTGGACGTGGTTTTATACTTTGAAGGTGAGCGCCGCCAG
ACATTTAGGATATTGCGCGGAGTGAAAAACCGTTTCGGCTCTACCAATGAAATCGGTGTTTTTGAAATGTCCGGCGCCGG
TTTGCGGGAAGTGTCCAATCCGTCCTCTTTCTTCTTAATGGATCATGTCCACCGGGATATGGCCGGTACGGTGGTGGTGC
CGACACTGGAGGGCACCCGCCCGCTGCTGGTGGAGATTCAGGCCCTGGTTTGCCCTACCTCCTTTGGTACACCCAGGCGG
ATGACTGCCGGGGTGGATCACAATCGGGTAGCTTTAATTATGGCGGTACTGGAAAAACGCCTGGGGTTGATGCTGGGTAA
CTGCGATGCTTACGTTAACGTGGTAGGCGGTGTGCGTATAGATGAACCCGCGGCCGATCTGGGTATTGCCATGGCCTTGG
CGTCCAGCTTTCGGGAACGGTCCATTGACGGGCGCATGGTGATTATGGGTGAGCTGGGGCTGACCGGTGAAATAAGACAG
GTTGCTGCAGCGGATAAAAGGATTCGGGAAGCTGCCCAGCTGGGTTTTGGCTCTTGCCTGGCGCCTCGACAAAAGGGTCT
GCCAAAAGTCAGCGGGCTAAATATTTTAGAAGCGGCAACACTGGCTGAAGCATTTGACTTGGCATTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(54-217)

Subunit ChlI of Mg-chelatase (ChlI)

(359-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.629

100

0.561
  radA Streptococcus pneumoniae Rx1

52.412

100

0.532
  radA Streptococcus pneumoniae D39

52.412

100

0.532
  radA Streptococcus pneumoniae R6

52.412

100

0.532
  radA Streptococcus pneumoniae TIGR4

52.412

100

0.532
  radA Streptococcus mitis NCTC 12261

52.203

100

0.528
  radA Streptococcus mitis SK321

52.203

100

0.528

Multiple sequence alignment