Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABFV80_RS09745 Genome accession   NZ_CP156659
Coordinates   2207224..2208846 (+) Length   540 a.a.
NCBI ID   WP_347484236.1    Uniprot ID   -
Organism   Vandammella animalimorsus strain SK20231019-0001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2202224..2213846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV80_RS09730 (ABFV80_001946) metG 2203388..2205526 (-) 2139 WP_347484235.1 methionine--tRNA ligase -
  ABFV80_RS09735 (ABFV80_001947) lptA 2205723..2206403 (+) 681 WP_124855042.1 lipopolysaccharide transport periplasmic protein LptA -
  ABFV80_RS09740 (ABFV80_001948) lptB 2206414..2207214 (+) 801 WP_095542460.1 LPS export ABC transporter ATP-binding protein -
  ABFV80_RS09745 (ABFV80_001949) rpoN/rpoN1 2207224..2208846 (+) 1623 WP_347484236.1 RNA polymerase factor sigma-54 Machinery gene
  ABFV80_RS09750 (ABFV80_001950) - 2208936..2210177 (+) 1242 WP_347486470.1 THUMP domain-containing protein -
  ABFV80_RS09755 (ABFV80_001951) - 2210187..2211365 (-) 1179 WP_343292264.1 M48 family metallopeptidase -
  ABFV80_RS09760 (ABFV80_001952) - 2211372..2213012 (-) 1641 WP_343292265.1 YjgN family protein -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 58885.82 Da        Isoelectric Point: 4.3791

>NTDB_id=1001889 ABFV80_RS09745 WP_347484236.1 2207224..2208846(+) (rpoN/rpoN1) [Vandammella animalimorsus strain SK20231019-0001]
MKLGVSLKTSQNLALTPQLQQAIRLLQLSTLEMQQEVEHMLEENPFLELQEGDGGDGLDGGDASLDTPPADGSAPELGRD
GPTSPGGDHVGSHDGAAEEGDGESDATGQAQGNEEREFEAVPEDWSGDGSMDISANDGEWGSDAPAPGAAGANDEVDAAD
INSAHISLADFLHQQAGEFFLDAVDRCALDFLIESLNEDGYLEDTLEDLALPLARSLEDVDELLHHFQLALNLLHTMEPA
GVGARDLAECLQLQLRALQRDEHCDCEPALLALAQQLCQQPLELLAKRDVRQLCQLIQAEPEQVRNALLLIARLEPKPGR
RFADVERNAIVPDVLVHAAQPGQQRGAPGGDFVVRINPDVMPRLRVHEVYAQALRGSSSHAELQQRVQEARWFIKNIQQR
FDTILRVSKAIVARQHDFFVHGPTAMRPLVLRDIAQELGMHESTISRVTTAKYMATPQGTFELKYFFGSGLETDSGASAS
STAVRALIKQWISAEDPSQPLSDSQIANLLKEQGIECARRTVAKYREALRIAPANLRKSL

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=1001889 ABFV80_RS09745 WP_347484236.1 2207224..2208846(+) (rpoN/rpoN1) [Vandammella animalimorsus strain SK20231019-0001]
ATGAAGCTGGGCGTTTCCCTCAAGACCTCGCAAAACCTGGCGCTGACGCCACAGTTGCAGCAAGCGATCCGGCTGCTGCA
GCTGTCCACGCTGGAGATGCAGCAAGAGGTCGAGCACATGCTGGAGGAAAACCCCTTCCTGGAACTGCAGGAAGGCGACG
GCGGCGATGGCCTGGATGGCGGCGACGCCAGCCTGGATACCCCGCCCGCAGACGGCAGCGCGCCAGAGCTGGGGCGCGAT
GGCCCCACCAGCCCCGGCGGCGACCACGTCGGCAGCCATGACGGCGCTGCCGAAGAGGGCGATGGCGAGAGCGACGCCAC
CGGCCAGGCCCAGGGCAACGAAGAGCGCGAGTTCGAGGCCGTGCCCGAGGACTGGAGCGGCGATGGCTCGATGGACATTT
CCGCAAACGATGGCGAATGGGGCAGCGATGCGCCCGCGCCCGGCGCAGCAGGCGCGAACGACGAGGTGGACGCGGCCGAC
ATCAACAGCGCGCACATTTCGCTGGCCGACTTCCTGCACCAGCAGGCCGGCGAGTTCTTCCTCGACGCCGTGGACCGCTG
CGCGCTGGACTTTCTGATCGAATCGCTCAACGAGGACGGCTACCTGGAGGACACGCTCGAAGACCTCGCCCTGCCGCTGG
CGCGCAGCCTGGAAGACGTGGACGAGCTGCTGCACCACTTTCAGCTGGCGCTGAACCTGCTGCACACCATGGAGCCCGCT
GGCGTGGGCGCGCGCGATCTGGCCGAATGCCTGCAACTGCAGCTGCGCGCGCTGCAGCGCGACGAGCACTGCGATTGCGA
ACCCGCGCTGCTGGCCCTGGCGCAGCAGCTGTGCCAGCAACCGCTGGAGCTGCTGGCCAAGCGCGATGTGCGCCAGCTCT
GCCAGCTCATCCAGGCCGAGCCCGAGCAGGTGCGCAACGCGCTGCTGCTGATCGCCCGGCTCGAACCCAAGCCCGGCAGG
CGCTTTGCCGACGTGGAGCGCAATGCCATCGTGCCCGACGTGCTGGTGCACGCTGCACAGCCCGGCCAGCAGCGCGGCGC
GCCAGGCGGCGACTTCGTGGTGCGCATCAACCCCGACGTCATGCCGCGCCTGCGCGTGCACGAGGTCTATGCCCAGGCGC
TGCGCGGCAGCAGCAGCCACGCCGAACTGCAGCAGCGCGTGCAGGAGGCACGCTGGTTCATCAAGAACATCCAGCAGCGC
TTTGACACCATCTTGCGCGTATCCAAGGCCATCGTCGCGCGCCAGCACGACTTCTTCGTGCATGGCCCCACCGCCATGCG
GCCGCTGGTGCTGCGCGACATCGCGCAGGAGCTGGGCATGCACGAATCGACCATCTCGCGCGTGACCACAGCCAAGTACA
TGGCCACGCCGCAAGGCACTTTCGAGCTCAAATACTTCTTCGGCTCCGGGCTGGAGACCGATAGCGGCGCCAGCGCCTCC
AGCACCGCCGTGCGCGCGCTGATCAAGCAATGGATCAGCGCCGAAGACCCCAGCCAGCCGCTTTCGGACAGCCAAATCGC
CAACCTGCTCAAGGAGCAGGGCATCGAATGCGCGCGCCGCACCGTGGCCAAATACCGCGAAGCGCTGCGCATCGCCCCCG
CCAATCTGCGCAAAAGCCTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(382-538)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(160-370)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.834

100

0.491

Multiple sequence alignment