Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABEG21_RS03565 Genome accession   NZ_CP156626
Coordinates   882336..883448 (-) Length   370 a.a.
NCBI ID   WP_347556607.1    Uniprot ID   -
Organism   Robbsia sp. KACC 23696     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 877336..888448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG21_RS03540 (ABEG21_03540) - 877360..878133 (+) 774 WP_347555897.1 SCO family protein -
  ABEG21_RS03545 (ABEG21_03545) rpoH 878278..879186 (-) 909 WP_347555898.1 RNA polymerase sigma factor RpoH -
  ABEG21_RS03550 (ABEG21_03550) - 879644..880213 (+) 570 WP_347555899.1 acyloxyacyl hydrolase -
  ABEG21_RS03555 (ABEG21_03555) ybiB 880314..881405 (-) 1092 WP_347555900.1 DNA-binding protein YbiB -
  ABEG21_RS03560 (ABEG21_03560) - 881558..882256 (+) 699 WP_347555901.1 fumarylacetoacetate hydrolase family protein -
  ABEG21_RS03565 (ABEG21_03565) pilA 882336..883448 (-) 1113 WP_347556607.1 signal recognition particle-docking protein FtsY Machinery gene
  ABEG21_RS03570 (ABEG21_03570) - 883937..885361 (+) 1425 WP_347555902.1 pitrilysin family protein -
  ABEG21_RS03575 (ABEG21_03575) - 885358..886755 (+) 1398 WP_347555903.1 pitrilysin family protein -
  ABEG21_RS03580 (ABEG21_03580) - 886809..887504 (+) 696 WP_347556608.1 nitroreductase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 38761.88 Da        Isoelectric Point: 6.2890

>NTDB_id=1001874 ABEG21_RS03565 WP_347556607.1 882336..883448(-) (pilA) [Robbsia sp. KACC 23696]
MIAPTPATLVTPAAAAAPVMPAAPPVTLTAPAAPSAAVPPASVSPVAAVTAPAPAVRDVFEIVPPPEPEPAAKQSWLQRL
RGGLSRTSSNLTTLFVGVKVDEALFEELEDALLLSDAGVEATQFLINGLRQKVRNDRLTEGSQVKAALRSLLVDLLKPLE
RSITLGREQPMVMMITGVNGAGKTTSIGKLAKHLQKYGQSVLLAAGDTFRAAAREQLVVWGQRNNVTVIEQEGGDPAAVI
FDAVNAARARKIDIVMADTAGRLPTQLHLMEELRKVKRVTAKAMDGAPHEVLLVLDANTGQNGLAQVKAFDDAIGLTGLI
VTKLDGTAKGGILAAIARQRPVPVYFIGVGESVDDLQPFSAVEFADALLG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1001874 ABEG21_RS03565 WP_347556607.1 882336..883448(-) (pilA) [Robbsia sp. KACC 23696]
ATCATCGCGCCGACGCCTGCTACGCTTGTCACGCCTGCCGCAGCTGCAGCGCCTGTCATGCCTGCCGCACCACCTGTCAC
GCTAACCGCACCTGCCGCGCCCAGCGCAGCCGTGCCGCCAGCGAGCGTAAGCCCGGTCGCCGCGGTAACCGCGCCCGCGC
CGGCGGTCCGCGACGTATTCGAGATCGTACCGCCGCCGGAGCCGGAGCCGGCCGCGAAGCAATCCTGGCTGCAACGCCTG
CGCGGCGGTCTGTCCCGCACGTCGTCCAATCTGACGACGCTGTTCGTCGGGGTCAAGGTCGACGAAGCGCTGTTTGAGGA
ATTGGAAGACGCGCTACTGCTTTCCGATGCCGGCGTGGAAGCCACGCAATTCCTGATCAACGGTCTGCGCCAGAAAGTCC
GCAACGACCGTCTGACGGAGGGCTCGCAAGTCAAGGCCGCGCTTCGCAGCCTGCTCGTGGATCTGCTGAAGCCGCTGGAG
CGCTCCATCACGCTGGGCCGCGAACAGCCGATGGTCATGATGATTACCGGTGTGAACGGTGCAGGCAAGACCACCAGCAT
CGGCAAACTGGCCAAGCATCTGCAGAAATACGGGCAGTCCGTGCTGCTGGCCGCCGGCGATACCTTCCGCGCGGCGGCGC
GCGAGCAACTCGTCGTCTGGGGTCAGCGCAACAACGTCACCGTAATCGAGCAAGAAGGCGGCGATCCGGCCGCCGTCATC
TTCGACGCCGTGAATGCCGCGCGCGCGCGGAAGATCGATATCGTCATGGCCGACACCGCCGGCCGCTTGCCCACCCAGTT
GCACCTGATGGAAGAACTGCGGAAGGTGAAACGCGTCACCGCGAAAGCGATGGACGGCGCGCCGCATGAAGTGCTGCTGG
TGCTGGATGCCAATACCGGGCAAAACGGCTTGGCGCAGGTCAAGGCGTTCGACGACGCGATCGGCTTGACCGGACTGATC
GTCACGAAGCTGGACGGTACCGCGAAAGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGCCCGGTACCGGTGTACTTCAT
CGGCGTCGGTGAATCGGTCGACGATCTGCAACCGTTCTCGGCGGTCGAATTCGCCGATGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(171-370)

SRP54-type protein, helical bundle domain (SRP54_N)

(91-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

60.625

86.486

0.524

Multiple sequence alignment