Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EL342_RS28410 Genome accession   NZ_LR134330
Coordinates   5961792..5962388 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain NCTC13715     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5956792..5967388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL342_RS32775 - 5957138..5957335 (-) 198 Protein_5480 TetR family transcriptional regulator -
  EL342_RS28390 (NCTC13715_05543) - 5957428..5959011 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  EL342_RS28395 (NCTC13715_05544) - 5959008..5959895 (+) 888 WP_009314747.1 SDR family NAD(P)-dependent oxidoreductase -
  EL342_RS28400 (NCTC13715_05545) - 5959969..5960508 (+) 540 WP_033988800.1 CbrC family protein -
  EL342_RS28405 (NCTC13715_05546) - 5960521..5961669 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  EL342_RS28410 (NCTC13715_05547) recR 5961792..5962388 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  EL342_RS28415 (NCTC13715_05548) - 5962467..5962793 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  EL342_RS28420 (NCTC13715_05549) dnaX 5962839..5964923 (-) 2085 WP_033988798.1 DNA polymerase III subunit gamma/tau -
  EL342_RS28425 (NCTC13715_05550) - 5964960..5965826 (+) 867 WP_023657576.1 substrate-binding periplasmic protein -
  EL342_RS28435 (NCTC13715_05553) - 5966080..5966457 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=1001872 EL342_RS28410 WP_003087237.1 5961792..5962388(-) (recR) [Pseudomonas aeruginosa strain NCTC13715]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1001872 EL342_RS28410 WP_003087237.1 5961792..5962388(-) (recR) [Pseudomonas aeruginosa strain NCTC13715]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGGACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGGATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48

Multiple sequence alignment