Detailed information NTG0100186

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAMY6639_RS12175
• Genome accession: NZ_CP006058
• Coordinates: 2492983..2494104 (+)
• Length: 373 a.a.
• NCBI ID: WP_061861129.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2487983..2499104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS12155 (BAMY6639_12780)	-	2488292..2489287 (-)	996	WP_015416740.1	DUF5105 domain-containing protein	-
BAMY6639_RS12160 (BAMY6639_12785)	-	2489414..2490814 (+)	1401	WP_061861127.1	YcdB/YcdC domain-containing protein	-
BAMY6639_RS12165 (BAMY6639_12790)	-	2491015..2492373 (+)	1359	WP_061861128.1	YcdB/YcdC domain-containing protein	-
BAMY6639_RS12170 (BAMY6639_12795)	-	2492370..2492873 (-)	504	WP_033575142.1	M15 family metallopeptidase	-
BAMY6639_RS12175 (BAMY6639_12800)	rapF	2492983..2494104 (+)	1122	WP_061861129.1	Rap family tetratricopeptide repeat protein	Regulator
BAMY6639_RS12180 (BAMY6639_12805)	-	2494220..2494999 (+)	780	WP_039252868.1	glucose 1-dehydrogenase	-
BAMY6639_RS12185 (BAMY6639_12810)	-	2495083..2496762 (+)	1680	WP_061861130.1	glycoside hydrolase family 13 protein	-
BAMY6639_RS12190 (BAMY6639_12815)	-	2496947..2497912 (+)	966	WP_061861506.1	metal ABC transporter substrate-binding protein	-
BAMY6639_RS12195 (BAMY6639_12820)	-	2497967..2498662 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44332.55 Da
• Isoelectric Point: 5.1616

>NTDB_id=100186 BAMY6639_RS12175 WP_061861129.1 2492983..2494104(+) (rapF) [Bacillus amyloliquefaciens UMAF6639]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLKCALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=100186 BAMY6639_RS12175 WP_061861129.1 2492983..2494104(+) (rapF) [Bacillus amyloliquefaciens UMAF6639]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCAAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.591	99.732	0.405