Detailed information NTG1001840

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL342_RS15720
• Genome accession: NZ_LR134330
• Coordinates: 3303720..3304724 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCTC13715
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3298720..3309724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL342_RS15690 (NCTC13715_03059)	fghA	3298812..3299663 (+)	852	WP_033938392.1	S-formylglutathione hydrolase	-
EL342_RS15695 (NCTC13715_03060)	ispF	3299734..3300207 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EL342_RS15700 (NCTC13715_03061)	truD	3300204..3301271 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
EL342_RS15705 (NCTC13715_03062)	surE	3301259..3302008 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EL342_RS15710 (NCTC13715_03063)	-	3302041..3302676 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EL342_RS15715 (NCTC13715_03064)	-	3302722..3303615 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
EL342_RS15720 (NCTC13715_03065)	rpoS	3303720..3304724 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EL342_RS15725 (NCTC13715_03067)	fdxA	3305151..3305474 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EL342_RS15730 (NCTC13715_03068)	mutS	3305541..3308108 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
EL342_RS15740 (NCTC13715_03069)	-	3308234..3309241 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1001840 EL342_RS15720 WP_003113871.1 3303720..3304724(+) (rpoS) [Pseudomonas aeruginosa strain NCTC13715]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1001840 EL342_RS15720 WP_003113871.1 3303720..3304724(+) (rpoS) [Pseudomonas aeruginosa strain NCTC13715]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653