Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL144_RS02830 Genome accession   NZ_LR134327
Coordinates   552826..553458 (+) Length   210 a.a.
NCBI ID   WP_005703405.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 547826..558458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL144_RS02805 (NCTC5906_00570) qseC 548476..549846 (-) 1371 WP_197718134.1 quorum sensing histidine kinase QseC -
  EL144_RS02810 (NCTC5906_00571) ciaR 549830..550501 (-) 672 WP_005703401.1 response regulator Regulator
  EL144_RS02815 (NCTC5906_00572) - 550597..551016 (-) 420 WP_005703402.1 YgiW/YdeI family stress tolerance OB fold protein -
  EL144_RS02820 (NCTC5906_00573) - 551140..551520 (+) 381 WP_005703403.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  EL144_RS02825 (NCTC5906_00574) fdhE 551610..552527 (+) 918 WP_005703404.1 formate dehydrogenase accessory protein FdhE -
  EL144_RS02830 (NCTC5906_00575) sxy/tfoX 552826..553458 (+) 633 WP_005703405.1 TfoX/Sxy family protein Regulator

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24328.68 Da        Isoelectric Point: 10.3131

>NTDB_id=1001730 EL144_RS02830 WP_005703405.1 552826..553458(+) (sxy/tfoX) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
MSNIISQLQLEFSELIEDVKVKNLFNGHGIFHQDIMFALHQNGSIYIKAEGDLVSYLEKLGAVAYAINHDSMKKLALYNY
YQLPNSIRRNKEKFKEILILAIKQAKAKKLSDELSKKERIKELANFSIKHERLLAKVNIYTVTEYRKLGAYHSFIRLKKL
GIPANIDLLWTFIAALKNKHVSLLSEEEKKKKLIKLNDLLESNGLRKMKI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1001730 EL144_RS02830 WP_005703405.1 552826..553458(+) (sxy/tfoX) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
ATGAGTAATATCATATCACAACTGCAACTTGAGTTTTCGGAACTTATCGAAGATGTTAAAGTTAAAAATTTATTTAACGG
CCATGGTATTTTTCATCAAGATATTATGTTTGCTTTACATCAAAATGGTAGCATTTATATAAAAGCAGAAGGAGATTTAG
TATCCTATTTGGAGAAATTAGGAGCTGTAGCTTATGCAATTAACCATGATAGTATGAAGAAGCTAGCCCTATACAATTAT
TATCAATTACCAAATTCAATTCGGAGAAACAAGGAAAAATTTAAAGAAATCCTTATTCTCGCTATAAAGCAAGCAAAAGC
TAAAAAACTTTCTGATGAGCTATCTAAAAAAGAACGTATTAAAGAATTAGCTAACTTTTCTATAAAACACGAAAGGCTCC
TAGCTAAGGTCAATATTTATACAGTAACTGAATATCGAAAATTAGGTGCCTATCATAGTTTTATTAGACTAAAGAAACTT
GGTATTCCTGCAAATATTGATTTATTGTGGACCTTTATTGCCGCATTAAAAAACAAACATGTAAGTTTGCTCTCTGAAGA
AGAGAAAAAGAAAAAGCTAATAAAGTTAAATGACTTACTAGAAAGCAATGGATTACGTAAAATGAAGATATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(117-191)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.306

93.333

0.376