Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EL133_RS06670 Genome accession   NZ_LR134323
Coordinates   1288788..1290989 (-) Length   733 a.a.
NCBI ID   WP_006738994.1    Uniprot ID   G5KH26
Organism   Streptococcus urinalis strain NCTC13766     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283788..1295989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS06640 (NCTC13766_01380) - 1284215..1285012 (-) 798 WP_006739510.1 Nif3-like dinuclear metal center hexameric protein -
  EL133_RS06645 (NCTC13766_01381) - 1285014..1285685 (-) 672 WP_006740123.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  EL133_RS06650 (NCTC13766_01382) nth 1285753..1286409 (-) 657 WP_006739111.1 endonuclease III -
  EL133_RS06655 (NCTC13766_01383) - 1286409..1287092 (-) 684 WP_006738646.1 DnaD domain-containing protein -
  EL133_RS06660 metA 1287110..1288026 (-) 917 Protein_1297 homoserine O-succinyltransferase -
  EL133_RS06665 (NCTC13766_01386) - 1288136..1288654 (-) 519 WP_006739995.1 adenine phosphoribosyltransferase -
  EL133_RS06670 (NCTC13766_01387) recJ 1288788..1290989 (-) 2202 WP_006738994.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EL133_RS06675 (NCTC13766_01388) - 1290986..1291750 (-) 765 WP_006740196.1 SDR family oxidoreductase -
  EL133_RS06680 (NCTC13766_01389) rnz 1291751..1292680 (-) 930 WP_006739250.1 ribonuclease Z -
  EL133_RS06685 (NCTC13766_01390) - 1292732..1293370 (-) 639 WP_006738758.1 hypothetical protein -
  EL133_RS06690 (NCTC13766_01391) hflX 1293363..1294601 (-) 1239 WP_126430506.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82853.80 Da        Isoelectric Point: 4.6085

>NTDB_id=1001687 EL133_RS06670 WP_006738994.1 1288788..1290989(-) (recJ) [Streptococcus urinalis strain NCTC13766]
MIKSKYDWIISETKTDEKFLKAAKKLGLDDLTASIAYQRGIQSEASLSHFLNDNLSDLHDPFLLHDMEKSVERIRLALSR
NEKILVYGDYDADGMTSASIMKETFEMLGAQAIIYLPNRFTDGYGPNLSVYKYYIEQEAVSLIVTVDNGVSGHEAIHFAQ
ENNVDVIVTDHHGLPETLPEAFAIIHPEHPEGNYPFPYLAGCGVAFKLACALLESIPDEMLDLVAIGTIADMVNLEGENR
IMVRLGLEMFKMTDRLGLQELLNIENVSSQSIDSDTIGFKIAPQLNALGRLDDPNPAIELLTGFDDDIVTEIAQLVSSKN
DERKALVDTIYQEAITLVDKEKPVQVLAKENWHPGVLGIVAGRLMEDLGQTIIVLDIKDGFAKGSARSIESLNIFEVLNQ
NRHLFEAVGGHAGAAGMTIAVEHIQSLSDILCQYVLENNIDTRQKSPLKVDYELIEEILNLKTIKILDQLAPFGMSNPKP
LFYMKDFEVLTARTMGQDNKHLKLKIKKGQFEGDVVAFNQGFLNQEFQQATQLELIVTMSVNQWNGNTSLQLMLEDARVN
GVQLIDLRHRNAQIPEGVTDIFEVTEETSEVIITEIPDKPEELRSLFLNNKFQSVYFKNRIIDAYYLTGYGTREQYAKLY
KTIYQFPEFDIRYKIGDLAHYLKIDHLLLIKMIQIFEELQFVSITNGLMTVNKEATKKKISESQIYQRLKETVAYQELMA
LGSPREIYEWLTS

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=1001687 EL133_RS06670 WP_006738994.1 1288788..1290989(-) (recJ) [Streptococcus urinalis strain NCTC13766]
ATGATAAAGTCAAAATATGATTGGATTATTTCTGAGACTAAAACTGACGAAAAATTTTTAAAAGCAGCAAAAAAACTTGG
ATTAGATGATTTAACAGCATCAATTGCTTACCAAAGAGGAATTCAATCGGAAGCATCTTTATCGCATTTTTTAAATGATA
ATTTATCAGATTTACATGATCCCTTTTTACTTCATGATATGGAAAAATCAGTAGAGCGTATTCGTCTTGCCCTCTCTAGA
AATGAGAAAATTTTAGTTTATGGTGATTACGATGCAGATGGTATGACATCAGCTTCTATTATGAAAGAAACATTTGAAAT
GTTAGGCGCTCAAGCTATTATTTATCTTCCAAATCGTTTTACCGATGGTTATGGTCCTAACTTAAGTGTTTATAAATACT
ACATTGAACAAGAAGCAGTTTCACTAATAGTCACTGTGGATAATGGCGTATCTGGTCATGAGGCTATTCATTTTGCACAG
GAAAATAATGTTGATGTGATTGTTACGGATCATCATGGTTTACCTGAAACTTTACCTGAGGCTTTTGCTATTATTCATCC
TGAGCATCCAGAAGGTAATTATCCTTTTCCTTACTTAGCAGGTTGTGGAGTAGCTTTTAAATTAGCCTGTGCTTTGTTAG
AATCTATCCCAGATGAAATGCTTGATTTAGTTGCTATCGGAACTATAGCTGATATGGTAAATCTTGAAGGCGAAAATCGG
ATAATGGTTCGTCTGGGTCTAGAAATGTTTAAGATGACTGATAGACTAGGATTGCAAGAACTTCTTAATATAGAAAATGT
TTCTAGTCAATCAATTGATTCAGATACGATTGGTTTTAAAATTGCTCCACAATTAAATGCACTTGGTCGTCTAGATGATC
CAAATCCAGCAATAGAATTATTGACAGGATTTGATGATGACATTGTAACTGAGATTGCACAATTAGTATCCTCAAAAAAT
GATGAACGAAAAGCGCTTGTTGATACGATTTACCAAGAAGCAATAACTTTAGTTGATAAAGAAAAACCTGTTCAAGTTTT
AGCTAAAGAGAATTGGCACCCAGGAGTTTTAGGGATTGTCGCTGGAAGACTTATGGAAGACTTAGGTCAGACCATAATTG
TTCTAGATATTAAAGATGGCTTTGCAAAAGGATCAGCTAGAAGTATTGAATCCTTAAATATCTTTGAAGTTTTAAATCAA
AATAGGCATTTATTTGAAGCTGTAGGTGGACATGCGGGCGCGGCTGGAATGACCATAGCTGTTGAGCATATACAATCATT
ATCAGATATATTATGTCAGTATGTTCTTGAAAATAATATAGATACTCGTCAAAAATCACCACTAAAGGTAGATTATGAAT
TAATAGAAGAGATATTAAACCTTAAGACAATAAAAATATTAGATCAGTTAGCACCATTTGGAATGTCAAACCCTAAACCT
CTCTTTTACATGAAAGATTTTGAAGTATTAACAGCAAGAACTATGGGTCAAGACAATAAACATCTAAAACTAAAAATTAA
AAAAGGTCAATTTGAAGGGGATGTTGTTGCTTTTAATCAAGGCTTTCTCAATCAAGAGTTTCAACAAGCAACTCAACTTG
AACTTATTGTGACTATGAGTGTTAACCAATGGAATGGTAATACTAGTCTTCAACTGATGTTAGAAGATGCAAGAGTAAAT
GGAGTACAATTGATCGATTTAAGACATCGTAATGCGCAAATACCAGAAGGGGTTACAGATATTTTTGAAGTAACGGAAGA
GACAAGTGAAGTTATTATTACTGAAATCCCAGATAAACCAGAAGAACTTAGGTCACTGTTTTTGAATAACAAATTTCAAT
CTGTCTATTTCAAAAATAGAATTATAGATGCCTACTATTTAACAGGTTATGGCACAAGAGAGCAATATGCAAAATTATAC
AAGACCATTTATCAATTTCCAGAATTTGATATTCGTTATAAGATAGGCGATTTAGCACACTATTTAAAAATTGATCACTT
ACTCTTGATCAAAATGATTCAAATTTTTGAAGAACTTCAATTTGTATCTATTACAAATGGTTTAATGACGGTAAACAAAG
AGGCTACAAAAAAGAAAATTTCTGAAAGTCAAATTTATCAAAGATTAAAAGAAACTGTGGCGTATCAAGAATTAATGGCT
TTAGGATCACCACGAGAGATCTATGAGTGGTTAACCTCCTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-433)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(586-731)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KH26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

61.465

100

0.618
  recJ Bacillus subtilis subsp. subtilis str. 168

35.104

100

0.37