Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BAMY6639_RS09925 Genome accession   NZ_CP006058
Coordinates   2034253..2034942 (-) Length   229 a.a.
NCBI ID   WP_021494677.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2029253..2039942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS09905 (BAMY6639_10440) - 2030158..2030505 (-) 348 WP_004393256.1 YxeA family protein -
  BAMY6639_RS09910 (BAMY6639_10445) yxdM 2030519..2032387 (-) 1869 WP_014419278.1 ABC transporter permease YxdM -
  BAMY6639_RS09915 (BAMY6639_10450) yxdL 2032362..2033135 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  BAMY6639_RS09920 (BAMY6639_10455) yxdK 2033279..2034256 (-) 978 WP_061861024.1 two-component system sensor histidine kinase YxdK -
  BAMY6639_RS09925 (BAMY6639_10460) braR 2034253..2034942 (-) 690 WP_021494677.1 two-component system response regulator YxdJ Regulator
  BAMY6639_RS09930 (BAMY6639_10470) - 2035092..2036531 (-) 1440 WP_061861025.1 sensor histidine kinase -
  BAMY6639_RS09935 (BAMY6639_10475) - 2036528..2037250 (-) 723 WP_061861026.1 response regulator transcription factor -
  BAMY6639_RS09940 (BAMY6639_10480) - 2037491..2038402 (+) 912 WP_061861027.1 ABC transporter ATP-binding protein -
  BAMY6639_RS09945 (BAMY6639_10485) - 2038399..2039157 (+) 759 WP_012118838.1 ABC transporter permease -
  BAMY6639_RS09950 (BAMY6639_10490) - 2039175..2039909 (+) 735 WP_012118839.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26561.26 Da        Isoelectric Point: 4.8564

>NTDB_id=100168 BAMY6639_RS09925 WP_021494677.1 2034253..2034942(-) (braR) [Bacillus amyloliquefaciens UMAF6639]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDVFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=100168 BAMY6639_RS09925 WP_021494677.1 2034253..2034942(-) (braR) [Bacillus amyloliquefaciens UMAF6639]
ATGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGGCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTTATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTATTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAGAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CGTTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397