Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   EL133_RS03670 Genome accession   NZ_LR134323
Coordinates   720460..721242 (-) Length   260 a.a.
NCBI ID   WP_006738573.1    Uniprot ID   G5KEF4
Organism   Streptococcus urinalis strain NCTC13766     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 715460..726242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS03640 (NCTC13766_00749) rplS 716478..716825 (+) 348 WP_006739149.1 50S ribosomal protein L19 -
  EL133_RS03645 (NCTC13766_00750) - 716935..717609 (+) 675 WP_006739464.1 hypothetical protein -
  EL133_RS03655 (NCTC13766_00752) - 717768..718847 (-) 1080 WP_006740075.1 site-specific integrase -
  EL133_RS03660 (NCTC13766_00753) - 719127..719903 (-) 777 WP_006739744.1 DUF1828 domain-containing protein -
  EL133_RS03665 (NCTC13766_00754) - 719928..720398 (-) 471 WP_006740293.1 DUF6978 family protein -
  EL133_RS03670 (NCTC13766_00755) irvR 720460..721242 (-) 783 WP_006738573.1 XRE family transcriptional regulator Regulator
  EL133_RS03675 (NCTC13766_00756) - 721613..721906 (+) 294 WP_000364978.1 ImmA/IrrE family metallo-endopeptidase -
  EL133_RS11315 (NCTC13766_00757) - 721890..722060 (-) 171 WP_001097075.1 hypothetical protein -
  EL133_RS03680 (NCTC13766_00758) - 722118..722276 (+) 159 WP_006738568.1 hypothetical protein -
  EL133_RS03685 (NCTC13766_00759) - 722308..722550 (+) 243 WP_000219235.1 hypothetical protein -
  EL133_RS03690 (NCTC13766_00760) - 722536..723090 (-) 555 WP_001229685.1 hypothetical protein -
  EL133_RS03695 (NCTC13766_00761) - 723148..723363 (+) 216 WP_006738909.1 helix-turn-helix domain-containing protein -
  EL133_RS03700 (NCTC13766_00762) - 723385..724296 (+) 912 WP_006739389.1 DUF3102 domain-containing protein -
  EL133_RS03705 (NCTC13766_00763) - 724289..724798 (+) 510 WP_006739549.1 ORF6C domain-containing protein -
  EL133_RS11320 (NCTC13766_00764) - 724810..724983 (+) 174 WP_006740015.1 hypothetical protein -
  EL133_RS03710 (NCTC13766_00765) - 724994..725173 (+) 180 WP_006740049.1 hypothetical protein -
  EL133_RS03715 (NCTC13766_00766) - 725148..725708 (-) 561 WP_006739582.1 DUF2441 domain-containing protein -
  EL133_RS03720 (NCTC13766_00767) - 725811..726041 (+) 231 WP_006738632.1 hypothetical protein -
  EL133_RS11325 (NCTC13766_00768) - 726025..726198 (+) 174 WP_006739094.1 hypothetical protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29362.81 Da        Isoelectric Point: 4.5302

>NTDB_id=1001667 EL133_RS03670 WP_006738573.1 720460..721242(-) (irvR) [Streptococcus urinalis strain NCTC13766]
MARGRGKLTPQDLEYMKIISNNINHFLITQNRKQIDVSRGTGIPPSTLTGYIKGTSLPIPGNVQKIADFFGVLKSDIDPR
FKSSKTSTAPNINNKVALLDEELKEPRHSDWISYGENLLSEQNTVENSKNTVNEPQIIYYTYNYYDHPVSAGTGQYLNDV
QVEQIELPVDYDADFVIPVYGDSMEPEYYSGDYVFVKLSVELSDSNIGVFEYYGDAYIKQLLINENGAFLHSLNSKYEDI
PIDANSDFRIIGRVTGKYPV

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1001667 EL133_RS03670 WP_006738573.1 720460..721242(-) (irvR) [Streptococcus urinalis strain NCTC13766]
ATGGCTAGAGGCAGAGGAAAGTTAACTCCTCAAGATTTAGAGTATATGAAAATAATTTCTAACAACATAAATCACTTCTT
GATTACTCAAAACAGGAAGCAGATTGATGTGTCTAGAGGAACGGGCATTCCGCCTAGCACCTTGACAGGATATATAAAAG
GAACATCCTTGCCAATACCTGGTAACGTTCAAAAAATAGCTGATTTTTTCGGAGTATTAAAATCAGATATCGACCCTCGT
TTTAAATCAAGCAAAACTTCTACTGCTCCTAATATCAACAACAAAGTCGCTCTACTAGATGAAGAGCTCAAAGAACCTCG
TCATAGTGATTGGATAAGTTACGGTGAAAATCTTTTATCTGAACAAAATACAGTAGAAAACAGTAAGAATACAGTAAACG
AACCTCAAATTATATACTATACCTATAATTATTACGACCACCCCGTTTCTGCTGGTACAGGGCAGTATCTAAATGATGTA
CAAGTTGAACAGATTGAATTGCCAGTCGATTATGACGCTGATTTTGTCATACCGGTTTATGGCGATTCTATGGAACCAGA
GTATTATTCTGGTGACTACGTATTTGTAAAATTATCTGTGGAACTTTCAGATAGCAATATTGGTGTATTTGAATACTATG
GAGATGCTTATATTAAACAGTTGCTTATTAACGAAAACGGAGCGTTTCTACATAGTCTAAACAGCAAGTACGAGGATATT
CCGATTGATGCTAATAGCGACTTTAGGATTATTGGTAGAGTTACTGGGAAATACCCAGTTTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(30-72)

Peptidase S24-like (Peptidase_S24)

(148-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KEF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

34.576

100

0.392

Multiple sequence alignment