Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   EL133_RS01825 Genome accession   NZ_LR134323
Coordinates   360692..363073 (-) Length   793 a.a.
NCBI ID   WP_006739910.1    Uniprot ID   G5KC86
Organism   Streptococcus urinalis strain NCTC13766     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 355692..368073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS01805 (NCTC13766_00361) - 357061..357942 (+) 882 WP_006739050.1 carbohydrate ABC transporter permease -
  EL133_RS01810 (NCTC13766_00362) - 357932..358750 (+) 819 WP_006739361.1 carbohydrate ABC transporter permease -
  EL133_RS01815 (NCTC13766_00363) - 358759..359838 (+) 1080 WP_006739504.1 ABC transporter ATP-binding protein -
  EL133_RS01820 (NCTC13766_00364) - 359841..360662 (+) 822 WP_006738795.1 metallophosphoesterase -
  EL133_RS01825 (NCTC13766_00365) recD/recD2/recDB 360692..363073 (-) 2382 WP_006739910.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EL133_RS01830 (NCTC13766_00366) lepB 363164..363757 (-) 594 WP_006740280.1 signal peptidase I -
  EL133_RS01835 (NCTC13766_00367) rnhC 363766..364668 (-) 903 WP_006738729.1 ribonuclease HIII -
  EL133_RS01840 (NCTC13766_00368) - 364783..365088 (+) 306 WP_006738532.1 hypothetical protein -
  EL133_RS01845 (NCTC13766_00369) - 365091..365636 (+) 546 WP_006738576.1 CvpA family protein -
  EL133_RS01850 (NCTC13766_00370) mutS/mutS2 365697..368033 (+) 2337 WP_006739844.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89584.42 Da        Isoelectric Point: 4.6719

>NTDB_id=1001647 EL133_RS01825 WP_006739910.1 360692..363073(-) (recD/recD2/recDB) [Streptococcus urinalis strain NCTC13766]
METFFSGTIDRIIFENASNFFKILLLEIDDTDSEFEDIEIMITGTFADIIEGEHYTFWGELSQHPKYGEQLKAYRYEKEK
PSSSGLIHYFSSDQFKGIGKKTAEKIVNLYGENTIDSILEAPEKLKTISGLSKANRESFIAKLKANYGTEQILAKLAEWG
LSNRIALQIFDIYKDDTISRIEGNPYQLVEDIQGVGFKMADLLAQELGIEADEPQRFLAAIVHSLFELSIDRGDTYVEAR
DLLEYSLNLLEESRNIELNPQLIANELTQLITEEKVHHFDTKVFDNTLYFAEEGIKKNINRLLDTPFEISYTDDEIHEEL
AELEKNLNIQYDTIQKEAILKALKSKVFILTGGPGTGKTTIINGIIQSYANLNDIDLRKKDIPIILAAPTGRAARRMNEL
TGIASATIHRHLGLNSDNDFQTIDDFLDCDLIIVDEFSMVDTWLANQLFSAISSNTQIIIVGDSDQLPSVGPGQVLADLL
KVNTIPSTSLQKIFRQSKDSTIVDLANDVRKGIIPQDFSAKKADRSYFEAQAQHIPTMVSKIVTSAIKSGIPAHEIQILA
PMYRGQAGINNLNTLMQDLLNPLQNQTQFAFNDIHFRKGDKVLHLVNDIEQNVFNGDIGTITDLIPSKYTESKQDEIFID
FDGTEVIYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPVTKQSGRLLQRNLIYTAITRSKSKLIMLGEFQAFSYAIQNKN
IRRNTYLVERFQENQVNTLSQKSDHSKNSISSQSQADGLPQNYLLTSDNINTIDPMIGITKEDLEQFFNVKNT

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=1001647 EL133_RS01825 WP_006739910.1 360692..363073(-) (recD/recD2/recDB) [Streptococcus urinalis strain NCTC13766]
ATGGAGACATTTTTTTCAGGAACTATTGACCGCATTATTTTTGAAAATGCTAGTAATTTCTTTAAGATTTTACTCCTAGA
AATTGACGATACTGATAGTGAGTTTGAGGATATTGAAATTATGATTACCGGCACCTTTGCTGATATCATAGAAGGCGAAC
ACTATACATTTTGGGGGGAGTTGAGTCAGCATCCTAAATATGGTGAACAGCTGAAAGCCTATCGCTATGAAAAAGAAAAA
CCTAGTTCATCAGGATTGATACACTACTTCTCCAGTGATCAATTTAAAGGAATTGGTAAAAAAACAGCTGAGAAAATTGT
AAATTTGTATGGTGAAAATACCATTGATAGCATTTTGGAGGCACCTGAGAAACTAAAAACCATTTCTGGACTATCTAAAG
CCAATCGCGAAAGTTTTATTGCTAAATTAAAAGCGAATTATGGTACTGAGCAAATCTTAGCCAAACTAGCAGAATGGGGA
TTGAGTAATCGTATTGCTCTTCAAATTTTTGACATTTATAAAGACGATACTATTTCTCGCATTGAAGGAAATCCATACCA
GTTAGTTGAAGATATCCAAGGAGTTGGTTTTAAAATGGCTGATTTATTAGCTCAAGAATTAGGTATTGAAGCTGATGAAC
CTCAACGATTTCTTGCAGCGATTGTTCATAGCCTTTTTGAGTTATCCATAGACCGTGGTGATACTTATGTCGAAGCGCGT
GACTTATTAGAATATTCATTAAACCTACTTGAAGAATCTCGTAACATTGAACTCAATCCTCAATTAATTGCCAATGAATT
AACCCAGTTAATCACTGAAGAAAAAGTCCATCACTTTGATACAAAAGTATTTGATAATACCCTATATTTTGCTGAAGAAG
GCATAAAGAAAAACATTAACCGATTACTAGATACTCCTTTTGAGATTTCCTATACTGATGACGAGATCCATGAAGAATTA
GCTGAATTAGAAAAAAATCTTAATATTCAATACGACACTATTCAAAAAGAAGCCATTTTAAAGGCCCTAAAAAGCAAAGT
CTTTATTTTAACGGGCGGTCCTGGTACTGGAAAGACCACTATCATCAATGGTATTATCCAAAGTTATGCTAACTTGAATG
ACATTGATTTAAGAAAAAAAGATATCCCTATCATTTTAGCCGCTCCAACAGGACGTGCAGCCAGACGAATGAATGAATTG
ACAGGAATAGCAAGTGCTACAATTCACCGTCATTTAGGCTTAAATAGCGACAATGACTTCCAGACTATTGATGATTTTTT
AGACTGTGACTTGATCATCGTTGATGAATTTTCAATGGTTGACACTTGGTTAGCCAATCAACTTTTTTCTGCTATTTCTT
CGAACACTCAAATTATTATTGTAGGTGATAGTGATCAATTACCTTCAGTTGGTCCTGGTCAAGTTCTTGCTGATTTATTA
AAAGTTAATACTATTCCAAGTACATCATTACAAAAAATTTTTAGACAATCAAAAGACTCTACCATAGTGGATCTTGCCAA
TGACGTTCGGAAAGGAATCATTCCTCAGGATTTTTCAGCAAAAAAAGCTGATCGTTCCTACTTTGAAGCCCAAGCTCAAC
ATATCCCAACAATGGTAAGTAAAATTGTAACTTCAGCCATAAAGAGTGGTATTCCTGCACATGAAATTCAAATTCTTGCA
CCAATGTATCGAGGACAAGCTGGAATTAATAATCTCAATACTTTAATGCAGGATTTATTGAATCCACTCCAAAATCAAAC
ACAATTCGCTTTTAATGACATTCATTTTAGAAAAGGAGATAAAGTCCTTCATTTAGTTAATGATATTGAACAGAATGTTT
TTAATGGTGACATTGGAACCATTACTGATTTAATTCCGTCAAAATACACAGAATCTAAGCAAGATGAAATTTTTATAGAC
TTTGATGGTACTGAAGTAATCTATCCTCGAAATGAATGGCTCAAATTAACCCTCGCTTATGCAATGAGTATTCATAAATC
ACAAGGGAGTGAATTCCAAGTCGTTATTTTACCAGTCACGAAACAAAGTGGTCGACTCCTTCAACGCAATCTTATCTATA
CTGCCATCACAAGATCAAAGAGTAAATTAATTATGCTCGGAGAATTCCAAGCTTTCTCTTATGCGATTCAAAACAAAAAT
ATCCGTCGCAATACTTATTTAGTTGAAAGATTCCAAGAAAATCAAGTTAATACACTATCTCAAAAATCTGATCATTCAAA
GAATTCTATTTCTAGTCAGTCTCAAGCAGATGGTTTACCTCAAAATTATCTGCTTACATCTGATAATATCAATACTATTG
ACCCAATGATTGGGATTACAAAAGAAGACTTAGAACAGTTTTTCAACGTTAAAAATACTTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KC86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.359

94.073

0.398

Multiple sequence alignment