Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABFG87_RS09850 Genome accession   NZ_CP156074
Coordinates   2074916..2076268 (+) Length   450 a.a.
NCBI ID   WP_136773181.1    Uniprot ID   A0A4U0PZ15
Organism   Chitiniphilus eburneus strain YS-30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2069916..2081268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG87_RS09840 flgL 2071864..2073249 (+) 1386 WP_136773183.1 flagellar hook-associated protein FlgL -
  ABFG87_RS09845 - 2073345..2074760 (-) 1416 WP_136773182.1 hypothetical protein -
  ABFG87_RS09850 radA 2074916..2076268 (+) 1353 WP_136773181.1 DNA repair protein RadA Machinery gene
  ABFG87_RS09855 trxA 2076485..2076811 (+) 327 WP_136773180.1 thioredoxin TrxA -
  ABFG87_RS09860 rho 2076993..2078243 (+) 1251 WP_026262895.1 transcription termination factor Rho -
  ABFG87_RS09865 - 2078338..2078607 (+) 270 WP_136773179.1 type B 50S ribosomal protein L31 -
  ABFG87_RS09870 - 2078726..2080372 (+) 1647 WP_136773178.1 glycosyltransferase family 39 protein -
  ABFG87_RS09875 - 2080410..2080580 (-) 171 WP_246038572.1 DUF3149 domain-containing protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47885.22 Da        Isoelectric Point: 7.4042

>NTDB_id=1001635 ABFG87_RS09850 WP_136773181.1 2074916..2076268(+) (radA) [Chitiniphilus eburneus strain YS-30]
MSKAKTLYACQSCGATSPKWQGQCPGCGEWNTLVEAIAEPKSSGRFQSLAADGEIQQLSDVDAAELPRTPTGLDELDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQALTRLANQRKVLYVSGEESPQQIALRARRLQLENAPVALMAEIGLEKILAGLSR
VKPEVAVIDSIQTVYTEALTSAPGSVAQVRECAAQLTRYAKRTGTTILLVGHVTKEGSLAGPRVLEHIVDAVLYFEGDTH
SSFRLIRAIKNRFGAVNELGVFAMTDKGLREVSNPSALFLSQHREPVPGSCVLVTQEGSRPMLVEVQALVDDAHSPQARR
LAVGMEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRIAEPAADLAVLLAIVSSLKNRPLQDKLIVFGEVGLAGEVRP
VQRGLERLREAAKLGFTHAIVPKANRPKSGIEGMTITAVERLEDAVGTAL

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=1001635 ABFG87_RS09850 WP_136773181.1 2074916..2076268(+) (radA) [Chitiniphilus eburneus strain YS-30]
ATGAGCAAAGCCAAGACCCTCTACGCCTGCCAGTCGTGCGGCGCCACATCCCCCAAATGGCAAGGTCAATGCCCCGGCTG
CGGCGAATGGAATACGCTGGTGGAGGCGATCGCCGAGCCCAAGAGCAGCGGCCGATTCCAGTCGCTGGCCGCCGATGGCG
AAATCCAGCAGTTGTCCGATGTGGACGCGGCGGAGCTGCCGCGTACGCCTACCGGGCTGGACGAACTGGATCGCGTGCTG
GGCGGTGGGTTGGTGCCGGGGGGCGTGGTCTTGATCGGTGGCGATCCGGGCATCGGCAAATCGACGCTGCTGCTTCAGGC
GCTGACGCGGCTGGCGAACCAGCGCAAGGTGTTGTACGTCTCGGGCGAGGAGTCGCCGCAACAGATCGCCCTGCGCGCAC
GGCGGCTACAGCTGGAGAACGCCCCGGTCGCGCTGATGGCCGAGATCGGGCTGGAGAAAATCCTGGCGGGTCTGTCGCGG
GTGAAGCCGGAGGTCGCGGTGATCGACTCGATCCAGACCGTCTACACCGAGGCGCTGACCAGCGCGCCCGGCAGCGTTGC
CCAGGTTCGCGAATGCGCGGCTCAGTTGACGCGCTACGCCAAGCGCACCGGTACCACCATTCTGCTGGTGGGGCACGTGA
CCAAGGAAGGCTCGCTGGCCGGGCCGCGCGTGCTGGAGCATATCGTGGACGCGGTGCTGTATTTCGAAGGCGACACGCAT
TCGAGCTTTCGCCTGATCCGCGCGATCAAGAACCGTTTCGGCGCGGTGAACGAGCTGGGCGTGTTCGCCATGACCGACAA
AGGGCTGCGCGAAGTCTCCAATCCCTCCGCGCTGTTCCTGTCCCAGCATCGCGAGCCGGTGCCCGGTTCCTGCGTGCTGG
TGACCCAGGAAGGATCGCGCCCGATGCTGGTCGAGGTCCAGGCGCTGGTGGACGACGCCCATTCGCCCCAGGCGAGACGC
TTGGCGGTGGGTATGGAACAGAACCGGCTGGCGCTGCTGCTGGCCGTGCTGCATCGCCACGCCGGCATCGCCGCCTTCGA
CCAGGATGTCTTCATCAACGCGGTGGGCGGGGTCCGGATCGCGGAGCCTGCCGCCGACCTGGCGGTCTTGCTGGCCATTG
TTTCCAGCCTGAAGAATCGCCCCTTGCAGGACAAACTGATCGTCTTCGGCGAAGTGGGGCTGGCCGGCGAGGTACGCCCG
GTGCAGCGCGGCCTGGAACGGCTGCGCGAAGCGGCCAAGCTGGGCTTCACCCACGCTATCGTGCCCAAGGCCAATCGGCC
CAAGAGCGGCATCGAAGGCATGACCATTACCGCTGTCGAGCGCCTGGAAGACGCGGTGGGGACGGCGCTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(58-217)

Subunit ChlI of Mg-chelatase (ChlI)

(358-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U0PZ15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.609

100

0.487
  radA Streptococcus pneumoniae Rx1

49.057

94.222

0.462
  radA Streptococcus pneumoniae D39

49.057

94.222

0.462
  radA Streptococcus pneumoniae R6

49.057

94.222

0.462
  radA Streptococcus pneumoniae TIGR4

49.057

94.222

0.462
  radA Streptococcus mitis SK321

49.057

94.222

0.462
  radA Streptococcus mitis NCTC 12261

48.821

94.222

0.46

Multiple sequence alignment