Detailed information NTG1001620

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABFG87_RS01425
• Genome accession: NZ_CP156074
• Coordinates: 328802..329896 (-)
• Length: 364 a.a.
• NCBI ID: WP_375591947.1
• Uniprot ID: -
• Organism: Chitiniphilus eburneus strain YS-30
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 323802..334896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFG87_RS01400	-	324758..325045 (-)	288	WP_375591944.1	hypothetical protein	-
ABFG87_RS01405	rpoH	325249..326100 (-)	852	WP_136772118.1	RNA polymerase sigma factor RpoH	-
ABFG87_RS01410	ftsX	326465..327370 (-)	906	WP_375591945.1	permease-like cell division protein FtsX	-
ABFG87_RS01415	ftsE	327459..328112 (-)	654	WP_136772116.1	cell division ATP-binding protein FtsE	-
ABFG87_RS01420	-	328191..328793 (-)	603	WP_375591946.1	GNAT family N-acetyltransferase	-
ABFG87_RS01425	pilA	328802..329896 (-)	1095	WP_375591947.1	signal recognition particle-docking protein FtsY	Machinery gene
ABFG87_RS01430	-	329998..331413 (+)	1416	WP_375591948.1	M16 family metallopeptidase	-
ABFG87_RS01435	-	331403..332767 (+)	1365	WP_375591949.1	M16 family metallopeptidase	-
ABFG87_RS01440	rsmD	332764..333309 (+)	546	WP_375591950.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ABFG87_RS01445	-	333550..333798 (+)	249	WP_136772110.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ABFG87_RS01450	-	333812..334864 (+)	1053	WP_136772109.1	hypothetical protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 38477.12 Da
• Isoelectric Point: 5.3176

>NTDB_id=1001620 ABFG87_RS01425 WP_375591947.1 328802..329896(-) (pilA) [Chitiniphilus eburneus strain YS-30]
MFSFFKQKLGKHETPETQPAPAEDSQSVEVTAAETPLPAPEVVAPIDTQPEPPKAAQPQDKPKLSWTERLKAGLAKTRTA
LGKNLAGLFGGGQIDEDLYEELETVLLTADMGVDATGHLLKDVRNRVSLKGLKDSKELKGALKESLNELIGPLEVPLSLG
EARPFILMVAGVNGAGKTTSIGKLAKFFQAQGKSVLLAAGDTFRAAAREQLVVWGERNGVQVIAQDGGDSAAVAFDAVNA
ARARGVDVVIVDTAGRLPTQLHLMEEIKKVKRVVQKADPAGPHEIMLVLDANTGQNAVSQVKAFDDALGLTGLVLTKLDG
TAKGGVIAAIAKQRAIPVRFVGVGEGIDDLRPFVASDYVDALFD

Nucleotide

• Length: 1095 bp

>NTDB_id=1001620 ABFG87_RS01425 WP_375591947.1 328802..329896(-) (pilA) [Chitiniphilus eburneus strain YS-30]
ATGTTCAGTTTTTTCAAACAAAAGCTTGGTAAGCATGAGACGCCGGAAACGCAGCCAGCGCCAGCGGAGGACTCCCAATC
TGTCGAGGTAACGGCAGCGGAAACCCCGTTGCCCGCCCCGGAGGTCGTGGCGCCGATCGATACCCAGCCTGAGCCGCCCA
AGGCGGCCCAGCCGCAGGATAAACCCAAGCTTTCCTGGACGGAACGCCTTAAAGCAGGTTTAGCCAAGACGCGCACCGCG
CTGGGCAAGAATCTGGCCGGCCTGTTCGGCGGCGGGCAGATCGATGAAGACCTTTACGAAGAGCTGGAAACCGTCTTGCT
GACGGCGGACATGGGCGTCGATGCCACCGGTCACTTGCTCAAGGATGTCCGTAACCGCGTTTCGCTCAAGGGTTTGAAGG
ACAGCAAGGAATTGAAGGGGGCATTGAAAGAATCGCTCAACGAGCTGATCGGGCCGCTGGAAGTGCCGCTATCGCTGGGC
GAGGCCCGACCGTTCATCCTGATGGTGGCCGGTGTCAATGGTGCGGGCAAGACCACCAGCATCGGCAAGCTGGCGAAGTT
CTTCCAGGCGCAGGGCAAGAGCGTGCTGCTTGCTGCGGGCGATACCTTCCGCGCCGCCGCGCGCGAGCAACTGGTGGTCT
GGGGCGAGCGCAATGGCGTGCAGGTGATTGCGCAGGATGGCGGCGACTCGGCTGCGGTGGCGTTCGATGCCGTCAACGCG
GCTCGCGCCCGGGGCGTCGATGTCGTGATCGTCGATACGGCCGGCCGCCTGCCTACCCAGTTGCACCTGATGGAAGAAAT
CAAAAAGGTGAAGCGCGTGGTGCAAAAGGCCGACCCGGCGGGCCCGCATGAGATCATGCTGGTGCTCGATGCCAATACCG
GGCAGAACGCGGTAAGCCAGGTCAAGGCGTTCGACGACGCGCTTGGTCTGACCGGGCTGGTGCTGACCAAGTTGGATGGC
ACGGCAAAGGGTGGGGTGATCGCGGCCATCGCCAAGCAGCGCGCCATTCCCGTGCGCTTTGTCGGGGTGGGCGAGGGGAT
CGACGATTTGCGCCCCTTCGTCGCCAGCGACTATGTTGATGCGCTGTTCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (165-363)

• SRP54-type protein, helical bundle domain (SRP54_N) (82-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.852	100	0.676