Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   EL130_RS06695 Genome accession   NZ_LR134320
Coordinates   1338016..1339086 (-) Length   356 a.a.
NCBI ID   WP_002271187.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1333016..1344086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS06670 (NCTC10832_01289) citE 1333167..1334069 (+) 903 WP_002263226.1 citrate (pro-3S)-lyase subunit beta -
  EL130_RS06675 (NCTC10832_01290) citF 1334056..1335591 (+) 1536 WP_002272026.1 citrate lyase subunit alpha -
  EL130_RS06680 (NCTC10832_01291) citX 1335584..1336120 (+) 537 WP_002272025.1 citrate lyase holo-[acyl-carrier protein] synthase -
  EL130_RS06685 (NCTC10832_01292) - 1336133..1337524 (+) 1392 WP_002283801.1 oxaloacetate decarboxylase subunit alpha -
  EL130_RS10325 - 1337592..1337728 (-) 137 Protein_1233 IS3 family transposase -
  EL130_RS06695 (NCTC10832_01293) xerS 1338016..1339086 (-) 1071 WP_002271187.1 tyrosine recombinase XerS Machinery gene
  EL130_RS06700 (NCTC10832_01294) - 1339307..1340215 (+) 909 WP_002265017.1 ABC transporter ATP-binding protein -
  EL130_RS06705 (NCTC10832_01295) - 1340236..1340979 (+) 744 WP_002266015.1 ABC transporter permease -
  EL130_RS06710 (NCTC10832_01296) - 1341027..1341905 (-) 879 WP_002262301.1 sensor histidine kinase -
  EL130_RS06715 (NCTC10832_01297) - 1341905..1342597 (-) 693 WP_002262300.1 response regulator transcription factor -
  EL130_RS06720 (NCTC10832_01298) - 1342730..1343563 (-) 834 WP_002271551.1 glycosyltransferase family 8 protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41592.88 Da        Isoelectric Point: 9.6657

>NTDB_id=1001599 EL130_RS06695 WP_002271187.1 1338016..1339086(-) (xerS) [Streptococcus mutans strain NCTC10832]
MRRELLLEKIDELKELMPWYVLEYYQSKLTVPYSFTTLYEYLKEYRRFFEWLIDSGVSNANKLADIPLETLEHLSKKDME
SFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGNETMEFLEYVDCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDS
VNVAGFAKPYLENYITIRRGRYKAEKTDLAFFLSEYRGVPNRMDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1001599 EL130_RS06695 WP_002271187.1 1338016..1339086(-) (xerS) [Streptococcus mutans strain NCTC10832]
ATGAGACGTGAACTCTTACTTGAAAAAATTGACGAACTTAAGGAACTTATGCCTTGGTATGTGCTAGAGTATTATCAATC
TAAATTGACAGTTCCTTATAGTTTTACGACTTTATATGAATACTTAAAAGAATATCGGCGTTTCTTTGAATGGTTAATTG
ATTCTGGTGTCTCTAATGCGAATAAACTTGCTGATATTCCGCTGGAAACTTTGGAGCATCTTAGTAAAAAAGATATGGAA
TCCTTTATTCTTTATTTACGAGAACGAACTCTTTTAAACACTAAAAACAAACGTCAAGGTGTTTCTCAGACAACGATAAA
CCGCACACTTTCAGCCTTATCAAGCCTTTATAAATACTTGACTGAGGAAGTTGAAAATGCTGATGGCGAACCTTATTTTT
ATCGAAATGTCATGAAAAAGGTATCAACTAAAAAGAAAAAGGAAACATTGGCCGCACGAGCTGAGAATATTAAACAAAAA
CTCTTTTTAGGCAATGAAACAATGGAATTTTTAGAATATGTAGATTGTGAATATGAACACAAACTTTCTAAGCGCGCTCT
TTCCTCTTTTCGAAAAAATAAAGAAAGAGATTTGGCAATTATTGCTTTGCTGCTAGCATCTGGAGTTCGTCTTTCAGAGG
CTGTTAACCTTGATCTTAAGGATGTTAATCTCAATATGATGATTATTGAAGTTACCCGTAAGGGCGGCAAACACGATTCG
GTTAATGTCGCTGGTTTCGCTAAACCTTATTTAGAAAACTACATTACTATCAGACGGGGGCGCTACAAGGCTGAAAAGAC
TGATCTAGCTTTCTTTTTATCCGAATATCGTGGTGTTCCTAATCGCATGGATGCTTCTTCTATTGAAAAAATGGTTGCTA
AATATTCGCAAGATTTCAAAATCCGCGTCACTCCCCACAAACTAAGACACACGCTTGCAACTAGATTATACGATGCCACC
AAATCACAAGTTTTGGTCAGTCATCAATTAGGTCATGCTTCTACTCAAGTAACAGACCTTTATACTCATATCGTTAATGA
TGAACAAAAAAATGCTTTAGATAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831