Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL130_RS04965 Genome accession   NZ_LR134320
Coordinates   972150..973949 (+) Length   599 a.a.
NCBI ID   WP_002283434.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 967150..978949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS04945 (NCTC10832_00949) - 968398..969366 (+) 969 WP_002283431.1 alcohol dehydrogenase catalytic domain-containing protein -
  EL130_RS10315 - 969611..969884 (+) 274 Protein_894 hypothetical protein -
  EL130_RS04955 (NCTC10832_00950) - 969990..970883 (+) 894 WP_002261898.1 alpha/beta hydrolase -
  EL130_RS04960 (NCTC10832_00951) coiA 971190..972128 (+) 939 WP_002283433.1 competence protein CoiA Machinery gene
  EL130_RS04965 (NCTC10832_00952) pepF 972150..973949 (+) 1800 WP_002283434.1 oligoendopeptidase F Regulator
  EL130_RS04970 (NCTC10832_00953) - 974166..974783 (+) 618 WP_002283435.1 HAD-IA family hydrolase -
  EL130_RS04975 (NCTC10832_00954) - 974833..975540 (+) 708 WP_002275166.1 O-methyltransferase -
  EL130_RS04980 (NCTC10832_00955) prsA 975602..976603 (+) 1002 WP_002272059.1 peptidylprolyl isomerase PrsA -
  EL130_RS04985 (NCTC10832_00957) - 976842..977342 (+) 501 WP_002265403.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69738.24 Da        Isoelectric Point: 4.7126

>NTDB_id=1001583 EL130_RS04965 WP_002283434.1 972150..973949(+) (pepF) [Streptococcus mutans strain NCTC10832]
MSDNRSHIEEKYQWDLTSIFPNDQTWEKEEKSLAKDLGIAVKRADHLLDSSQSLLEITELYLALSRRLEKLYVYASMKND
QDTTVSYYQELQAKATALIAKFNQTFAFYEPEFMLLSTEKYQDFLADCPDLLPYQHFFERLFKQKKHVLSQKEEALLAEA
SEIFGAAGETFEILDNADIIFPWVKDETGEEVELSHGNFISLMESKNRKVRQEAYKAMYSIYEQYQHTYAKTLQTNVKVN
NFQAKIRNYKSAREAALAANFIPETVYDTLVEAVHNHLPLLQRYVKLRQNVLGLDDLKMYDIYVPLSEMDMTFTYEAALD
KAEEVLAIFGRDYAERVHRAFRERWIDVRVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEATDEKQRFAILNHYLDGFKGTVFRQTQFAEFEDLIYKADQAGDVLTSDY
LNNLYADLNEKYYGLSKENNPEIQYEWARIPHFYYNFYVYQYATGFAAASFLAHKIVHGNQEDKDKYLNYLKAGNSDYPL
NVIAKAGLDMTESTYLDQAFKVFEERLIELEELVEKGID

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1001583 EL130_RS04965 WP_002283434.1 972150..973949(+) (pepF) [Streptococcus mutans strain NCTC10832]
ATGTCTGATAATCGCAGTCATATTGAAGAAAAATACCAATGGGATTTGACCAGCATTTTTCCAAACGATCAAACTTGGGA
AAAAGAGGAGAAATCTTTAGCTAAGGATTTGGGAATAGCCGTTAAAAGAGCAGATCATCTGCTTGACTCCAGTCAAAGTC
TGCTGGAGATCACAGAACTTTATCTGGCTTTGAGCCGTCGTTTGGAAAAACTTTATGTTTATGCTTCTATGAAGAATGAC
CAAGACACCACGGTCAGTTACTATCAAGAATTACAAGCTAAGGCAACAGCCTTGATCGCTAAATTTAATCAGACTTTTGC
CTTCTATGAGCCTGAATTTATGCTGTTATCAACAGAAAAATATCAGGATTTTTTGGCAGATTGTCCGGATTTATTGCCTT
ATCAACATTTTTTTGAAAGATTATTCAAACAAAAAAAGCATGTTCTTTCTCAAAAGGAAGAGGCACTTTTGGCTGAAGCC
AGTGAAATTTTTGGTGCTGCTGGTGAAACCTTTGAAATTCTTGACAATGCCGATATTATCTTTCCTTGGGTAAAAGACGA
GACAGGAGAAGAAGTTGAACTATCTCATGGTAATTTCATCAGTTTGATGGAATCCAAAAACCGCAAAGTTCGACAAGAAG
CTTATAAGGCCATGTACAGCATTTATGAGCAGTATCAACACACCTATGCTAAAACGCTGCAAACCAATGTTAAAGTTAAT
AATTTTCAAGCGAAAATCAGAAACTATAAGAGTGCGCGTGAAGCTGCTCTGGCAGCTAATTTTATTCCCGAAACTGTTTA
TGACACTTTAGTAGAAGCGGTCCATAATCACTTACCTTTGTTACAGCGTTATGTGAAGCTAAGGCAAAACGTTTTAGGCC
TTGATGATCTTAAGATGTATGATATTTACGTACCACTCTCAGAAATGGATATGACTTTTACTTATGAAGCAGCCTTGGAC
AAAGCAGAAGAAGTGTTAGCTATTTTTGGGCGAGACTATGCTGAGCGTGTGCATCGTGCATTTAGGGAGCGTTGGATTGA
TGTACGAGTCAATAAAGGCAAGCGTTCAGGCGCTTATTCAGGTGGTTCCTATGACACCAATGCTTTTATATTGCTTAACT
GGCAGGATACTTTGGATAACCTCTTCACTCTTGTGCATGAAACAGGACATTCTCTGCATTCTACTTTTACACGTGAAAAC
CAACCCTATGTTTATGGTGATTATTCTATTTTTCTGGCAGAAATTGCTTCGACAACTAATGAAAATATTTTGACAGAGAC
ACTGCTCAAGGAAGCAACAGATGAGAAACAGCGTTTTGCGATTTTGAATCATTATCTTGATGGTTTCAAAGGAACGGTTT
TCCGCCAAACACAATTTGCAGAATTTGAAGACTTGATTTATAAGGCTGATCAAGCAGGTGACGTTTTGACCAGTGATTAT
TTGAATAATCTCTATGCGGATCTCAATGAAAAATACTATGGTTTAAGTAAGGAAAATAATCCGGAAATTCAGTATGAATG
GGCTAGAATTCCGCATTTTTACTACAATTTTTATGTCTATCAGTACGCCACAGGCTTTGCTGCAGCTAGTTTTTTGGCTC
ACAAAATTGTTCATGGCAATCAAGAAGATAAGGACAAATATCTCAATTATCTTAAAGCTGGCAATTCAGACTATCCTCTC
AATGTTATTGCTAAAGCAGGTCTTGATATGACTGAGTCGACCTATCTTGACCAAGCCTTCAAAGTCTTTGAAGAACGGTT
AATAGAGTTGGAAGAGTTGGTCGAAAAAGGAATTGATTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.565

99.833

0.694