Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABFK62_RS08820 | Genome accession | NZ_CP156044 |
| Coordinates | 1824042..1824422 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836914.1 | Uniprot ID | A0A098SJS3 |
| Organism | Acinetobacter baumannii strain D13 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1819042..1829422
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFK62_RS08790 (ABFK62_08790) | kdsB | 1819945..1820706 (+) | 762 | WP_000680692.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABFK62_RS08795 (ABFK62_08795) | - | 1820718..1821698 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABFK62_RS08800 (ABFK62_08800) | - | 1821710..1822051 (+) | 342 | WP_001183027.1 | PilZ domain-containing protein | - |
| ABFK62_RS08805 (ABFK62_08805) | - | 1822069..1822842 (+) | 774 | WP_000497300.1 | TatD family hydrolase | - |
| ABFK62_RS08810 (ABFK62_08810) | - | 1822880..1823488 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABFK62_RS08815 (ABFK62_08815) | - | 1823498..1824052 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABFK62_RS08820 (ABFK62_08820) | xcpV | 1824042..1824422 (+) | 381 | WP_000836914.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABFK62_RS08825 (ABFK62_08825) | xcpW | 1824422..1825123 (+) | 702 | WP_000594579.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABFK62_RS08830 (ABFK62_08830) | gspK | 1825123..1826082 (+) | 960 | WP_059264851.1 | type II secretion system minor pseudopilin GspK | - |
| ABFK62_RS08835 (ABFK62_08835) | - | 1826312..1826908 (+) | 597 | WP_000908449.1 | 6-carboxytetrahydropterin synthase | - |
| ABFK62_RS08840 (ABFK62_08840) | ung | 1826959..1827672 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| ABFK62_RS08845 (ABFK62_08845) | - | 1827669..1828793 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABFK62_RS08850 (ABFK62_08850) | tadA | 1828800..1829303 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14074.34 Da Isoelectric Point: 10.0341
>NTDB_id=1001543 ABFK62_RS08820 WP_000836914.1 1824042..1824422(+) (xcpV) [Acinetobacter baumannii strain D13]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1001543 ABFK62_RS08820 WP_000836914.1 1824042..1824422(+) (xcpV) [Acinetobacter baumannii strain D13]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |