Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EL130_RS01775 Genome accession   NZ_LR134320
Coordinates   350898..351653 (-) Length   251 a.a.
NCBI ID   WP_002269787.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 345898..356653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS01755 (NCTC10832_00329) purC 347804..348511 (-) 708 WP_002283937.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  EL130_RS01760 (NCTC10832_00330) comA 348633..349214 (-) 582 WP_002264115.1 ATP-binding cassette domain-containing protein Regulator
  EL130_RS01765 (NCTC10832_00331) - 349442..349690 (-) 249 WP_002263135.1 acyl carrier protein -
  EL130_RS01770 (NCTC10832_00332) plsX 349692..350690 (-) 999 WP_002283938.1 phosphate acyltransferase PlsX -
  EL130_RS01775 (NCTC10832_00333) recO 350898..351653 (-) 756 WP_002269787.1 DNA repair protein RecO Machinery gene
  EL130_RS01780 (NCTC10832_00334) - 351643..352818 (-) 1176 WP_002277785.1 pyridoxal phosphate-dependent aminotransferase -
  EL130_RS01785 (NCTC10832_00335) - 352907..353875 (-) 969 WP_002277784.1 ribose-phosphate diphosphokinase -
  EL130_RS01790 (NCTC10832_00336) gbpB 354000..355295 (-) 1296 WP_002264119.1 glucan-binding protein GbpB -
  EL130_RS01795 (NCTC10832_00337) mreD 355405..355911 (-) 507 WP_002263141.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29384.89 Da        Isoelectric Point: 6.6577

>NTDB_id=1001541 EL130_RS01775 WP_002269787.1 350898..351653(-) (recO) [Streptococcus mutans strain NCTC10832]
MQTKETRGLVLYNRQFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1001541 EL130_RS01775 WP_002269787.1 350898..351653(-) (recO) [Streptococcus mutans strain NCTC10832]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCAATTTAGAGAAGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATTTTGACCAATA
TTTTTGAAATCCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTTGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653