Detailed information NTG0100145

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMY6639_RS06350
• Genome accession: NZ_CP006058
• Coordinates: 1326157..1327287 (-)
• Length: 376 a.a.
• NCBI ID: WP_015418149.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1321157..1332287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS06330 (BAMY6639_06695)	-	1321266..1322117 (-)	852	WP_014305754.1	DUF72 domain-containing protein	-
BAMY6639_RS06335 (BAMY6639_06700)	-	1322144..1322497 (-)	354	WP_031378393.1	YunG family protein	-
BAMY6639_RS06340 (BAMY6639_06705)	-	1322570..1323934 (-)	1365	WP_015418147.1	allantoinase	-
BAMY6639_RS06345 (BAMY6639_06710)	-	1324114..1325709 (+)	1596	WP_015418148.1	PucR family transcriptional regulator	-
BAMY6639_RS06350 (BAMY6639_06720)	rapC	1326157..1327287 (-)	1131	WP_015418149.1	Rap family tetratricopeptide repeat protein	Regulator
BAMY6639_RS20490 (BAMY6639_06725)	-	1327416..1327595 (-)	180	WP_007410112.1	hypothetical protein	-
BAMY6639_RS06360 (BAMY6639_06730)	-	1327721..1328854 (-)	1134	WP_015418150.1	hypothetical protein	-
BAMY6639_RS06365 (BAMY6639_06735)	-	1328911..1330107 (-)	1197	WP_015418151.1	MFS transporter	-
BAMY6639_RS06370 (BAMY6639_06740)	-	1330224..1331435 (-)	1212	WP_197985421.1	pyridoxal-phosphate-dependent aminotransferase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44339.74 Da
• Isoelectric Point: 6.3557

>NTDB_id=100145 BAMY6639_RS06350 WP_015418149.1 1326157..1327287(-) (rapC) [Bacillus amyloliquefaciens UMAF6639]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLETIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVFAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=100145 BAMY6639_RS06350 WP_015418149.1 1326157..1327287(-) (rapC) [Bacillus amyloliquefaciens UMAF6639]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGACGAG
CTGCTGGAAACAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
AAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTGGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCCGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTTTGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.327	100	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	39.842	100	0.402