Detailed information NTG1001430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL257_RS05960
• Genome accession: NZ_LR134318
• Coordinates: 1322649..1323656 (+)
• Length: 335 a.a.
• NCBI ID: WP_126360680.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain NCTC9428
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1317649..1328656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL257_RS05935 (NCTC9428_01181)	ispF	1318519..1318992 (+)	474	WP_126360670.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EL257_RS05940 (NCTC9428_01182)	truD	1318989..1320047 (+)	1059	WP_126360672.1	tRNA pseudouridine(13) synthase TruD	-
EL257_RS05945 (NCTC9428_01183)	surE	1320035..1320784 (+)	750	WP_126360674.1	5'/3'-nucleotidase SurE	-
EL257_RS05950 (NCTC9428_01184)	-	1320826..1321461 (+)	636	WP_172604539.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EL257_RS05955 (NCTC9428_01185)	-	1321673..1322542 (+)	870	WP_126360678.1	peptidoglycan DD-metalloendopeptidase family protein	-
EL257_RS05960 (NCTC9428_01186)	rpoS	1322649..1323656 (+)	1008	WP_126360680.1	RNA polymerase sigma factor RpoS	Regulator
EL257_RS05965 (NCTC9428_01188)	fdxA	1324214..1324537 (-)	324	WP_126360682.1	ferredoxin FdxA	-
EL257_RS05970 (NCTC9428_01189)	mutS	1324701..1327283 (-)	2583	WP_126360684.1	DNA mismatch repair protein MutS	-
EL257_RS05975 (NCTC9428_01190)	-	1327485..1328237 (+)	753	WP_126368012.1	LexA family transcriptional regulator	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38176.24 Da
• Isoelectric Point: 4.8877

>NTDB_id=1001430 EL257_RS05960 WP_126360680.1 1322649..1323656(+) (rpoS) [Pseudomonas fluorescens strain NCTC9428]
MALSKEVPEFDIDDEVLLMETGIDSDSMSNDEGAAPPSVRSKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPE
EEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=1001430 EL257_RS05960 WP_126360680.1 1322649..1323656(+) (rpoS) [Pseudomonas fluorescens strain NCTC9428]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTTATGGAGACCGGCATCGATTCGGATTC
GATGTCGAATGATGAAGGGGCTGCTCCACCTTCCGTTCGTTCCAAATCCAAACACTCCGCTTCACTTAAACAACATAAAT
ACATCGATTACACGCGTGCACTTGATGCCACGCAGTTGTATCTCAACGAAATCGGCTTTTCCCCATTGCTCTCACCGGAA
GAAGAAGTTCATTTTGCGCGCTTGTCGCAAAGTGGCGATCCGGCCGGGCGCAAGCGCATGATTGAAAGTAACCTGCGGCT
GGTGGTCAAAATCGCCCGGCGTTACGTCAATCGGGGGCTGTCGCTGCTGGATCTGATCGAAGAGGGCAACCTCGGGTTGA
TCCGGGCGGTGGAAAAGTTCGATCCCGAGCGCGGCTTCCGCTTCTCGACCTACGCAACCTGGTGGATCCGTCAGACCATC
GAGCGCGCGATCATGAATCAAACCCGGACCATCCGGTTGCCGATCCATGTGGTCAAGGAGCTCAACGTGTACCTGCGGGC
GGCACGGGAGCTGACGCAAAAACTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAAAAGCCGGTGGCCG
AGGTCAAGCGCATGCTGGGCCTGAACGAACGGGTTTCTTCGGTCGACGTCTCGCTGGGTCCGGATTCGGATAAAACCCTG
CTGGACACTCTCACTGATGATCGTCCTACCGATCCGTGCGAACTGCTGCAGGATGACGACCTGTCGCAGAGCATCGATCA
ATGGCTGTCTGAATTGACCGACAAGCAGCGCGAGGTGGTCGTACGCCGCTTCGGCCTGCGCGGCCATGAAAGCAGTACGC
TGGAAGATGTCGGCCTGGAGATCGGCCTGACCCGGGAACGGGTGCGGCAGATCCAGGTGGAAGGACTCAAGCGCCTTCGT
GAAATTCTCGAAAAAAATGGCCTGTCGAGCGAATCGCTGTTCCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-94)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.672	100	0.657