Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EL139_RS10040 Genome accession   NZ_LR134316
Coordinates   2032835..2036059 (-) Length   1074 a.a.
NCBI ID   WP_111716038.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2027835..2041059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL139_RS10030 (NCTC6181_02062) - 2027931..2029046 (-) 1116 Protein_1926 aminotransferase -
  EL139_RS10035 (NCTC6181_02063) rexA 2029206..2032835 (-) 3630 WP_281429733.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL139_RS10040 (NCTC6181_02064) rexB 2032835..2036059 (-) 3225 WP_111716038.1 ATP-dependent nuclease subunit B Machinery gene
  EL139_RS10045 (NCTC6181_02065) - 2036234..2037160 (+) 927 WP_022554458.1 neutral zinc metallopeptidase -
  EL139_RS10050 (NCTC6181_02066) - 2037252..2037920 (-) 669 WP_111716036.1 ABC transporter ATP-binding protein -
  EL139_RS10055 (NCTC6181_02067) - 2037930..2039006 (-) 1077 WP_111716033.1 ABC transporter permease -
  EL139_RS10060 (NCTC6181_02068) - 2039079..2039465 (-) 387 WP_111716031.1 DUF1722 domain-containing protein -
  EL139_RS10065 (NCTC6181_02069) - 2039458..2039835 (-) 378 WP_111716028.1 OsmC family protein -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123675.77 Da        Isoelectric Point: 5.2056

>NTDB_id=1001402 EL139_RS10040 WP_111716038.1 2032835..2036059(-) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLTLLPERGSFSITVTRFAQMARYFTFSNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALMSFAKTIETGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNSKCQEIVIGSYISQKAYQKPFIKGNIYEAS
IQFLQGLAEQYKTKPIYSQSEKVFAPSFSRVTQLFEANHDFSQLDWQLEEKDKEDIFLWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNMIKSGLFGRFAD
SDVDRFEEYLQFADIKGFTKFSKPFTINSSRHYPLELLNEVREAIFSPLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KKLGQNELEIEKNEEVWKTFTDVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTALSLLNAATQELVLSVPAVVNEFSDDLS
PYLKELMSFGLPLIDKRSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHQQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALQVTDQVVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQFGADDLGHLFGAMYLHLQEPKLDLASFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNALYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLGQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=1001402 EL139_RS10040 WP_111716038.1 2032835..2036059(-) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTGGCTGAGGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGACCTTGCTACCAGAACGAG
GGTCCTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACATTCTCTAACTCTGAGTCAAAACAAGCC
TTAGACGAGACAGCCTTAGCCATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGAATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAGGATTACCATCAAGACAGTGCTTTGATGTCCTTTGCTAAAACTATTGAAACAGGTCAATTGGACGAACAACTGTCAAA
AACAGTGCTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTATCTATTATCTCTTCTTAACAGCAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAAGCCTACCAAAAACCGTTTATTAAAGGGAATATTTATGAGGCTAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACAAGACAAAACCGATTTATTCTCAATCGGAAAAGGTTTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTAACCATGATTTTTCTCAACTAGATTGGCAATTGGAAGAAAAAGATAAAG
AAGACATTTTCCTCTGGCAAAGCCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCTTACCAGTTGCAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAACCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAACGCTATAATTGGCGTCGTGAAGATATTTTAAACATGATCAAATCAGGACTTTTTGGAAGGTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGACATTAAAGGATTTACTAAATTTTCAAAGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCATTGGAGTTGTTAAACGAAGTAAGAGAGGCTATTTTTTCTCCGTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGACGTTCAGTTAGCAGAAAATATG
AAAAAACTGGGCCAAAATGAACTAGAAATAGAGAAAAATGAGGAAGTTTGGAAAACATTTACCGACGTGTTAACCTCTTT
TTACCAGATTTTTGGTCAGGAAAAATTGAAACTGGCGGACTGTCTTTCCTTAATCAAAATGGGAATGCAGTCAGCCCACT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCCCATTTTCCAAAGCAAGTCAAAGAGACAGGGTTACTTTCTGATCAAGAACGGGCAAG
AATTAACGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAAGAAAAATCATCAGACAGCTC
TTTCACTTTTGAATGCTGCCACTCAAGAATTGGTCCTAAGTGTTCCGGCAGTAGTGAATGAATTTTCAGATGACTTGTCG
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTGCCACTGATTGATAAAAGAAGCAATCGCTTTTCATATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTGGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACTGTTGCCCTTCGTTATCTCCGACGACAATTAAGACATCAGCAAGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAGGTTATTGAGGCGCGTTTTCCAAGCGATCGTCCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTCTGCAGTATGTCCTAGGCCTACAAGAAGCCGAATCCA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCCATTCATCAAACTAACCAAGAAAAAGAGTTTCAATATATCTATCAAGACAGTGCTGA
AGATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCAACCGCTTCTATTTTGCGTCTTAATCAGAATATGACGG
TAAGTCGACAAGAAGAACCTTTTGCCCTTCAGGTAACAGATCAGGTAGTGGTGCATGGGATAATTGATAGGATTGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGTGCGAATCAGTTTGATATCGGGAAGTTTTACAATGGATT
AAGTCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAATTTGGAGCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTGGACTTAGCATCTTTCAAAGCACTTGATGATAAACTAGTTGAAAGTATTTAT
AAAGAATTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
ACTTTATTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGGCCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAATCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.701

100

0.436