Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABFV68_RS12750 Genome accession   NZ_CP156029
Coordinates   2627386..2628138 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain CH1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2622386..2633138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS12725 (ABFV68_12725) mreC 2622822..2623685 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ABFV68_RS12730 (ABFV68_12730) mreB 2623716..2624729 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ABFV68_RS12735 (ABFV68_12735) radC 2624821..2625516 (-) 696 WP_007408165.1 DNA repair protein RadC -
  ABFV68_RS12740 (ABFV68_12740) - 2625548..2626117 (-) 570 WP_007408164.1 Maf family protein -
  ABFV68_RS12745 (ABFV68_12745) - 2626258..2627259 (-) 1002 WP_039254352.1 SPOR domain-containing protein -
  ABFV68_RS12750 (ABFV68_12750) comC 2627386..2628138 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  ABFV68_RS12755 (ABFV68_12755) - 2628278..2629570 (-) 1293 WP_007408161.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABFV68_RS12760 (ABFV68_12760) - 2629629..2632271 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  ABFV68_RS12765 (ABFV68_12765) - 2632724..2632915 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=1001398 ABFV68_RS12750 WP_012118107.1 2627386..2628138(-) (comC) [Bacillus velezensis strain CH1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1001398 ABFV68_RS12750 WP_012118107.1 2627386..2628138(-) (comC) [Bacillus velezensis strain CH1]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment