Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABFV68_RS04245 Genome accession   NZ_CP156029
Coordinates   833694..834485 (+) Length   263 a.a.
NCBI ID   WP_025650231.1    Uniprot ID   -
Organism   Bacillus velezensis strain CH1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 828694..839485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS04220 (ABFV68_04220) - 830689..831573 (+) 885 WP_025650233.1 PhzF family phenazine biosynthesis isomerase -
  ABFV68_RS04225 (ABFV68_04225) - 831650..832234 (+) 585 WP_007408549.1 nitroreductase -
  ABFV68_RS04230 (ABFV68_04230) - 832273..832464 (-) 192 WP_003155508.1 YfhD family protein -
  ABFV68_RS04235 (ABFV68_04235) - 832535..832645 (-) 111 WP_003155504.1 YfhE family protein -
  ABFV68_RS04240 (ABFV68_04240) - 832703..833602 (-) 900 WP_025650232.1 TIGR01777 family oxidoreductase -
  ABFV68_RS04245 (ABFV68_04245) recX 833694..834485 (+) 792 WP_025650231.1 recombination regulator RecX Regulator
  ABFV68_RS04250 (ABFV68_04250) - 834492..834803 (+) 312 WP_025650230.1 YfhH family protein -
  ABFV68_RS04255 (ABFV68_04255) - 834949..836142 (+) 1194 WP_076982912.1 MFS transporter -
  ABFV68_RS04260 (ABFV68_04260) - 836182..836571 (-) 390 WP_020955526.1 DUF2606 family protein -
  ABFV68_RS04265 (ABFV68_04265) - 836534..837445 (-) 912 WP_020955527.1 trypsin-like serine protease -
  ABFV68_RS04270 (ABFV68_04270) - 837592..837744 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  ABFV68_RS04275 (ABFV68_04275) - 837868..838137 (+) 270 WP_003155492.1 YfhJ family protein -
  ABFV68_RS04280 (ABFV68_04280) - 838269..838796 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  ABFV68_RS04285 (ABFV68_04285) - 838882..839217 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30964.11 Da        Isoelectric Point: 6.0196

>NTDB_id=1001357 ABFV68_RS04245 WP_025650231.1 833694..834485(+) (recX) [Bacillus velezensis strain CH1]
MPFITKISTQKNNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1001357 ABFV68_RS04245 WP_025650231.1 833694..834485(+) (recX) [Bacillus velezensis strain CH1]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAATAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTACTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAGATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATATCGGATGCGGTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTTATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787

Multiple sequence alignment