Detailed information NTG1001353

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ABFV68_RS01985
• Genome accession: NZ_CP156029
• Coordinates: 392602..393750 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain CH1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 387602..398750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFV68_RS01965 (ABFV68_01965)	-	388029..388712 (-)	684	WP_346988032.1	ABC transporter ATP-binding protein	-
ABFV68_RS01970 (ABFV68_01970)	-	388727..390133 (-)	1407	WP_346988033.1	ABC transporter permease	-
ABFV68_RS01975 (ABFV68_01975)	-	390346..391029 (+)	684	WP_007410267.1	response regulator transcription factor	-
ABFV68_RS01980 (ABFV68_01980)	-	391016..392449 (+)	1434	WP_020955322.1	ATP-binding protein	-
ABFV68_RS01985 (ABFV68_01985)	rapC	392602..393750 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
ABFV68_RS01990 (ABFV68_01990)	phrC	393734..393853 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
ABFV68_RS01995 (ABFV68_01995)	-	394001..394096 (-)	96	WP_021495118.1	YjcZ family sporulation protein	-
ABFV68_RS02000 (ABFV68_02000)	-	394191..395555 (-)	1365	WP_007410272.1	aspartate kinase	-
ABFV68_RS02005 (ABFV68_02005)	ceuB	395969..396922 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
ABFV68_RS02010 (ABFV68_02010)	-	396912..397859 (+)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
ABFV68_RS02015 (ABFV68_02015)	-	397853..398611 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=1001353 ABFV68_RS01985 WP_007410270.1 392602..393750(+) (rapC) [Bacillus velezensis strain CH1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=1001353 ABFV68_RS01985 WP_007410270.1 392602..393750(+) (rapC) [Bacillus velezensis strain CH1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568