Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ABFV68_RS01810 Genome accession   NZ_CP156029
Coordinates   348907..349071 (+) Length   54 a.a.
NCBI ID   WP_012116773.1    Uniprot ID   -
Organism   Bacillus velezensis strain CH1     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 343907..354071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS01805 (ABFV68_01805) srfAB 345798..348890 (+) 3093 Protein_315 surfactin non-ribosomal peptide synthetase SrfAB -
  ABFV68_RS01810 (ABFV68_01810) comS 348907..349071 (+) 165 WP_012116773.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6153.16 Da        Isoelectric Point: 12.0559

>NTDB_id=1001352 ABFV68_RS01810 WP_012116773.1 348907..349071(+) (comS) [Bacillus velezensis strain CH1]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1001352 ABFV68_RS01810 WP_012116773.1 348907..349071(+) (comS) [Bacillus velezensis strain CH1]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment