Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ABFV68_RS01775 Genome accession   NZ_CP156029
Coordinates   331434..331832 (-) Length   132 a.a.
NCBI ID   WP_020955304.1    Uniprot ID   -
Organism   Bacillus velezensis strain CH1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 326434..336832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS01750 (ABFV68_01750) - 326606..327808 (+) 1203 WP_119027075.1 GTP-binding protein -
  ABFV68_RS01755 (ABFV68_01755) - 327873..329009 (+) 1137 WP_061581750.1 zinc-dependent alcohol dehydrogenase -
  ABFV68_RS01760 (ABFV68_01760) - 329024..329458 (+) 435 WP_020955303.1 RDD family protein -
  ABFV68_RS01765 (ABFV68_01765) - 329530..329853 (+) 324 WP_015239126.1 YckD family protein -
  ABFV68_RS01770 (ABFV68_01770) - 329957..331393 (+) 1437 WP_007409356.1 family 1 glycosylhydrolase -
  ABFV68_RS01775 (ABFV68_01775) nin/comJ 331434..331832 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  ABFV68_RS01780 (ABFV68_01780) nucA/comI 331853..332290 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABFV68_RS01785 (ABFV68_01785) hxlB 332647..333204 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  ABFV68_RS01790 (ABFV68_01790) hxlA 333201..333836 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  ABFV68_RS01795 (ABFV68_01795) - 334068..334430 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.97 Da        Isoelectric Point: 4.9712

>NTDB_id=1001350 ABFV68_RS01775 WP_020955304.1 331434..331832(-) (nin/comJ) [Bacillus velezensis strain CH1]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1001350 ABFV68_RS01775 WP_020955304.1 331434..331832(-) (nin/comJ) [Bacillus velezensis strain CH1]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment