Detailed information NTG1001342

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABEB33_RS21720
• Genome accession: NZ_CP156025
• Coordinates: 4803733..4804953 (+)
• Length: 406 a.a.
• NCBI ID: WP_406850936.1
• Uniprot ID: -
• Organism: Herbaspirillum huttiense strain CLJ01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4798733..4809953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEB33_RS21695 (ABEB33_21670)	coaD	4798757..4799239 (-)	483	WP_006461533.1	pantetheine-phosphate adenylyltransferase	-
ABEB33_RS21700 (ABEB33_21675)	rsmD	4799276..4799947 (-)	672	WP_402704773.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ABEB33_RS21705 (ABEB33_21680)	-	4800028..4801350 (-)	1323	WP_402704771.1	M16 family metallopeptidase	-
ABEB33_RS21710 (ABEB33_21685)	-	4801388..4802047 (-)	660	WP_209532664.1	ParA family protein	-
ABEB33_RS21715 (ABEB33_21690)	-	4802184..4803563 (-)	1380	WP_343742674.1	pitrilysin family protein	-
ABEB33_RS21720 (ABEB33_21695)	pilA	4803733..4804953 (+)	1221	WP_406850936.1	signal recognition particle-docking protein FtsY	Machinery gene
ABEB33_RS21725 (ABEB33_21700)	-	4804958..4805650 (+)	693	WP_121040482.1	cell division ATP-binding protein FtsE	-
ABEB33_RS21730 (ABEB33_21705)	ftsX	4805647..4806570 (+)	924	WP_402704766.1	permease-like cell division protein FtsX	-
ABEB33_RS21735 (ABEB33_21710)	rpoH	4807131..4808030 (+)	900	WP_034332696.1	RNA polymerase sigma factor RpoH	-
ABEB33_RS21740 (ABEB33_21715)	-	4808119..4808709 (-)	591	WP_034332698.1	SCO family protein	-
ABEB33_RS21745 (ABEB33_21720)	cyoE	4808722..4809615 (-)	894	WP_134223499.1	heme o synthase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 42738.34 Da
• Isoelectric Point: 5.4879

>NTDB_id=1001342 ABEB33_RS21720 WP_406850936.1 4803733..4804953(+) (pilA) [Herbaspirillum huttiense strain CLJ01]
MFSFFKRKPKPEAQPALPPQAEPAPQPAPVVPPPTESVAPAPAAPAAVQPPVAAPAPVAPPAPTPIADPEPVPQPLTAPA
APPEPVAAIEESSEEVEIVAAPEPAPEAKRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLVSDAGVEATQW
LLAELKKKVKNERLTEAAQVRTALRTLLIDLLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLLA
AGDTFRAAAREQLAVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIAKAM
NSAPHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDLQPFNATEF
VDALLS

Nucleotide

• Length: 1221 bp

>NTDB_id=1001342 ABEB33_RS21720 WP_406850936.1 4803733..4804953(+) (pilA) [Herbaspirillum huttiense strain CLJ01]
ATGTTCAGTTTTTTCAAAAGAAAACCCAAACCGGAAGCGCAACCCGCGCTGCCGCCCCAGGCCGAACCGGCGCCCCAGCC
TGCCCCGGTGGTTCCGCCCCCGACTGAATCCGTTGCTCCTGCTCCTGCCGCTCCCGCTGCGGTTCAGCCACCAGTTGCCG
CGCCTGCACCGGTAGCACCGCCAGCCCCGACGCCGATCGCTGACCCGGAGCCTGTGCCCCAACCCTTGACTGCCCCGGCC
GCCCCCCCGGAGCCGGTGGCCGCCATCGAAGAGTCCTCCGAAGAAGTCGAGATCGTCGCCGCCCCTGAACCGGCGCCCGA
GGCCAAGCGCTCGTGGCTGTCGCGCCTGAAGGCCGGGCTGTCCAAGACCTCGAGCAACCTGACCACGCTGTTCGTGGGTG
CGCGCATCGATGAAGACTTGTACGAGGAACTGGAATCGGCCCTGCTGGTATCGGACGCCGGCGTGGAAGCCACCCAGTGG
CTGCTGGCCGAACTGAAGAAAAAAGTCAAAAACGAGCGCCTGACCGAAGCCGCCCAGGTGCGCACCGCCCTGCGCACCCT
GCTGATCGACCTGCTGCAGCCGCTGCAGCGCCCGCTGGTGCTGGGCCGCGACAAGCCGCTGGTGATGATGATTGCCGGCG
TCAACGGTGCCGGCAAGACCACCACCATCGGCAAGCTGGCCCTGCATCTGCAGGCGCACGGCCAGTCGGTGCTGCTGGCC
GCCGGCGACACCTTCCGCGCTGCGGCCCGCGAGCAGCTGGCGGTCTGGGGCGAGCGCAACAACGTCCAGGTGATCGCCCA
GGAATCCGGCGACCCGGCCGCCGTCGCCTATGACTCGGTGCATTCGGCGCAAGCCCGCGGCACCCATGTGGTGATGGTCG
ATACCGCCGGACGCCTGCCGACGCAATTGCACCTGATGGATGAACTCAAGAAGATCAAGCGGGTCATTGCCAAGGCGATG
AACTCGGCACCACACGAAGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAATGCGCTGGCCCAGGTCAAGGCCTTCGA
TGATGCGCTGGGGCTGACCGGACTGGTAGTGACCAAGCTGGATGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCCA
AGACCCGCCCGGTGCCGCTGTACTTCATCGGCGTGGGCGAGAAGATCGAAGACCTGCAGCCGTTCAATGCCACCGAATTC
GTCGATGCCCTCCTGAGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (207-405)

• SRP54-type protein, helical bundle domain (SRP54_N) (126-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.009	100	0.542