Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABEB33_RS20920 Genome accession   NZ_CP156025
Coordinates   4632510..4634000 (+) Length   496 a.a.
NCBI ID   WP_406850919.1    Uniprot ID   -
Organism   Herbaspirillum huttiense strain CLJ01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4627510..4639000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEB33_RS20895 (ABEB33_20870) - 4628755..4629783 (+) 1029 WP_286868436.1 SIS domain-containing protein -
  ABEB33_RS20900 (ABEB33_20875) - 4629783..4630337 (+) 555 WP_402707721.1 KdsC family phosphatase -
  ABEB33_RS20905 (ABEB33_20880) lptC 4630334..4630942 (+) 609 WP_034331443.1 LPS export ABC transporter periplasmic protein LptC -
  ABEB33_RS20910 (ABEB33_20885) lptA 4630994..4631632 (+) 639 WP_406850918.1 lipopolysaccharide transport periplasmic protein LptA -
  ABEB33_RS20915 (ABEB33_20890) lptB 4631635..4632378 (+) 744 WP_134223405.1 LPS export ABC transporter ATP-binding protein -
  ABEB33_RS20920 (ABEB33_20895) rpoN/rpoN1 4632510..4634000 (+) 1491 WP_406850919.1 RNA polymerase factor sigma-54 Machinery gene
  ABEB33_RS20925 (ABEB33_20900) hpf 4634153..4634515 (+) 363 WP_034331451.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ABEB33_RS20930 (ABEB33_20905) grxD 4634886..4635197 (+) 312 WP_039784040.1 Grx4 family monothiol glutaredoxin -
  ABEB33_RS20935 (ABEB33_20910) - 4635220..4635822 (+) 603 WP_288067201.1 UbiX family flavin prenyltransferase -
  ABEB33_RS20940 (ABEB33_20915) - 4635911..4636669 (-) 759 WP_039784036.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55193.68 Da        Isoelectric Point: 5.1963

>NTDB_id=1001341 ABEB33_RS20920 WP_406850919.1 4632510..4634000(+) (rpoN/rpoN1) [Herbaspirillum huttiense strain CLJ01]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRLLADGAVSSSPSSGVAETSHE
GSGEAAPAASDGDSSFDYQDNTPETGVTGDADWSFDDVARSGKSPDDDDARPQLEAHELTLREHLLEQIRVTARTLRDRA
LLELLTDALDESGYLEEPLEDIHARLPEELGIDMEELSISLKLLQSLDPAGVGARSAGECLALQIRRLPKIPFVTRKLAL
RIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQTVIRQCRPHPGAEFARDASDYVVPDVIVKQTKNGWQVMLNHEVMPKL
RVNAMYASALKQAKGEGSLSSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHEST
ISRVTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTVAK
YREVLKIPPVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1001341 ABEB33_RS20920 WP_406850919.1 4632510..4634000(+) (rpoN/rpoN1) [Herbaspirillum huttiense strain CLJ01]
ATGAAACAGTCGCTCCAGTTACGTACCTCGCAGCACCTCGCATTGACGCCGCAACTGCAGCAGTCGATCAGACTGTTGCA
ACTGTCGACGCTGGAACTGCACCAGGAACTGGAACAGATCCTCTCCGACAATCCCCTGCTGGAACGCCTCGACGACGCGC
TCGACAATTCGGTACGTCTGCTGGCCGATGGTGCGGTCTCCAGCTCGCCCTCCAGCGGCGTTGCTGAAACCAGTCACGAA
GGCAGTGGCGAAGCGGCACCAGCCGCCAGCGATGGTGATTCGAGCTTCGACTACCAGGACAACACGCCGGAGACCGGTGT
CACGGGGGATGCCGACTGGAGCTTCGACGACGTCGCGCGCAGCGGCAAGTCGCCAGACGATGACGATGCCCGCCCGCAAC
TCGAAGCGCACGAACTGACCCTGCGCGAACACCTGCTGGAACAGATCCGCGTGACCGCACGCACCCTGCGTGACCGTGCG
CTGCTGGAACTGCTCACCGATGCGCTCGACGAGAGCGGCTATCTGGAAGAGCCGCTGGAAGACATCCACGCACGCCTGCC
CGAAGAGCTGGGCATCGACATGGAAGAGCTGTCGATTTCGCTCAAGCTGCTGCAGAGCCTGGACCCGGCGGGCGTCGGTG
CGCGCAGTGCCGGCGAATGCCTGGCCCTGCAGATCCGCCGCCTGCCCAAGATTCCCTTCGTGACGCGCAAGCTGGCCCTG
AGGATCGTGGAGGATTACCTGCCGCTGTTTGCGCAACGCGATTTCAACAAGATCAAGAAGGCACTGGATTGCGATGACGA
AGACCTGCGTGAAGCGCAGACCGTGATCCGCCAGTGCCGTCCGCATCCGGGTGCGGAATTCGCGCGCGATGCGTCGGACT
ACGTGGTGCCGGACGTGATTGTCAAGCAGACAAAGAACGGCTGGCAGGTCATGCTCAACCATGAGGTCATGCCCAAGCTG
CGCGTCAATGCGATGTATGCCAGTGCATTGAAGCAAGCCAAGGGAGAAGGTTCGCTGTCGTCGCAGTTGCAGGAAGCCAA
GTGGCTCATCAAAAACATGCGGCAACGTTTCGATACAATTTTGCGCGTCGCGCAGGCTATTGTGGAACGTCAAAGAAACT
TCTTTTCACATGGGGCAGTCGCCATGCGCCCCCTTGTGCTGCGTGAAATTGCTGATACACTGGGTCTACACGAGAGCACC
ATCTCTCGCGTGACGACTCAGAAATACATGCTCACTCCGCATGGAATGTTTGAGTTGAAATACTTCTTCGGTAGCCATGT
CGCGACTGAAACCGGAGGTGAAGCTTCCTCCACCGCGATACGGGCGCTGATCAAACAGTTGATAGGAGCCGAGAACCCGC
AGACCCCATTATCCGATAGCAAGATTGCGGATATGCTGGCAGAACAAGGCATGGTGGTCGCGCGACGCACAGTCGCCAAA
TACCGCGAAGTGTTGAAGATTCCGCCGGTCAATCTCCGCAAGTCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

58.661

100

0.601

Multiple sequence alignment