Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QJV29_RS10995 Genome accession   NZ_CP156021
Coordinates   2193941..2195746 (-) Length   601 a.a.
NCBI ID   WP_311175142.1    Uniprot ID   -
Organism   Listeria swaminathanii strain UTK S2-0008     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2188941..2200746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV29_RS10975 (QJV29_010975) isdE 2189866..2190738 (-) 873 WP_230907348.1 heme ABC transporter substrate-binding protein IsdE -
  QJV29_RS10980 (QJV29_010980) hbp2 2190825..2192534 (-) 1710 WP_311175140.1 hemin/hemoglobin-binding protein Hbp2 -
  QJV29_RS10985 (QJV29_010985) isdC 2192547..2193173 (-) 627 WP_311175141.1 heme uptake protein IsdC -
  QJV29_RS10990 (QJV29_010990) - 2193382..2193642 (-) 261 WP_185638643.1 DUF3116 family protein -
  QJV29_RS10995 (QJV29_010995) pepF 2193941..2195746 (-) 1806 WP_311175142.1 oligoendopeptidase F Regulator
  QJV29_RS11000 (QJV29_011000) - 2195819..2196934 (-) 1116 WP_311175143.1 competence protein CoiA -
  QJV29_RS11005 (QJV29_011005) mecA 2197061..2197714 (-) 654 WP_185392519.1 adaptor protein MecA -
  QJV29_RS11010 (QJV29_011010) spxA 2197946..2198341 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  QJV29_RS11015 (QJV29_011015) - 2198661..2199629 (-) 969 WP_185392518.1 ABC transporter ATP-binding protein -
  QJV29_RS11020 (QJV29_011020) - 2199626..2200702 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68535.80 Da        Isoelectric Point: 4.6217

>NTDB_id=1001278 QJV29_RS10995 WP_311175142.1 2193941..2195746(-) (pepF) [Listeria swaminathanii strain UTK S2-0008]
MSKTNTLPLREEVPENLTWDLTTIYPNDEAWEKAFVDLQKITEESSQFKGRLAESSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLNSRAGSLVTKLMSALSYFDPEILAMDENVLKQFLSENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSSTFNTLNNADMKFPTIKDENGEEIEITHGRFGKLLESNDPRVRRDAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYAATRGYTSAREAALSGNHIPETVYDSLLKSVNANANLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGEEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQQGV
ALTADYLTETYFDINKKYYGEAMVYDDEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1001278 QJV29_RS10995 WP_311175142.1 2193941..2195746(-) (pepF) [Listeria swaminathanii strain UTK S2-0008]
TTGAGTAAAACAAATACATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTAACTACTATTTATCCAAA
CGATGAAGCTTGGGAAAAAGCTTTTGTGGATTTACAAAAAATAACAGAAGAAAGTAGTCAATTTAAAGGACGTTTAGCAG
AAAGTAGCCAAACTCTTTATGAGGCGCTTCAATTCCGTGATAAAGCATATGATTTAATTAGTAACTTATATGTATATGCT
CATTTAAAAATGGACCAAGATACAGCGAATGCGAAATATCAAGGATTAAATAGTCGTGCAGGAAGTTTAGTTACCAAATT
AATGTCTGCACTGTCTTATTTTGATCCTGAAATTTTAGCCATGGATGAGAATGTTTTAAAACAATTTTTAAGTGAAAATA
AAGATTTACAATTATATGCCCATTTATTAGAAGAGTTGAATTTAAGTCGACCTTATATTTTAAGTGAGAAAGAAGAGGCT
TTACTTGCGAATGCAGGTGAGGTTCTTGGAAGTTCTTCTAGTACATTTAATACATTAAACAATGCGGATATGAAGTTCCC
GACGATTAAAGATGAAAATGGGGAAGAAATCGAAATTACGCATGGTCGTTTCGGTAAGTTGTTAGAAAGCAATGATCCGC
GTGTGCGTCGTGATGCATTCCTTGGTGTGTATTCCGTTTACGAAGGATTGAAAAATACGTTAGCGTCTACTTTGAATGGA
CAAGTGAAAAAATCCAATTTTTACGCGGCTACTCGAGGATATACATCTGCTCGCGAGGCTGCGCTTTCGGGTAACCACAT
TCCGGAAACTGTATATGATTCATTATTAAAATCTGTGAATGCCAATGCTAATTTACTTCATCGTTATGTAAAATTACGTA
AAGAGTTGCTTGGTTTAGAAGAATTGCATATGTACGATCTTTATACGCCACTTTCGGATGATGTTAATTTGGAATTCACT
TATGAGGAAGCAAAGGAACTTGTACTTGAAGCGTTAAAACCACTTGGAGAAGAATATCAAGCTATTTTAAAAGAAGCGTT
TGATAGTCGCTGGATTGATGTGATGGAAAATAAAGGAAAACGTAGTGGGGCTTATTCTTCTGGGTCATATAGTACGAATC
CTTATATTTTACTCAACTGGCAAGATAATATTAATAATGTGTATACGCTGGCTCATGAACTTGGACATAGTGTGCATAGT
TATTATACAAGAAAAAATCAACCGTTTGTTTATGGCGATTATTCGATTTTCTTAGCGGAAGTTGCTTCTACTACGAACGA
AAACCTGTTGACAGATTATCTGCTTAAAAAATATGATGATCCAAAAGTACGTGCTTATTTACTAAATCATTATTTAGATG
GTTTTAAAGGAACGGTATTCCGTCAAACACAATTTGCTGAATTTGAGCATGCGATCCATCAAGCTGATCAACAAGGTGTG
GCTTTGACTGCGGATTATTTAACAGAAACGTATTTTGATATTAATAAGAAATATTACGGGGAAGCGATGGTTTATGACGA
TGAAATTGGTTATGAATGGTCTCGTATTCCGCATTTCTATATGAACTATTATGTGTTCCAATATGCGACTGGTTTTTCGG
CAGCTTCTGCGTTAAGCGCGAAAATCTTAACGGAAGGTCAAGAAGCAGTAACGGCTTATATCGACTTTTTGAAAGCGGGA
AGTTCGGATTATCCGATTGATGTTTTGAAAAAAGCTGGAGTTGATATGGCGACACCTAATCCTGTAGATGATGCGTTAAA
AGTATTTGAACAAAGATTAGATGAATTAGAAAAACTAGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.689

98.502

0.509

Multiple sequence alignment