Detailed information NTG1001249

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL184_RS04925
• Genome accession: NZ_LR134315
• Coordinates: 1015052..1015984 (+)
• Length: 310 a.a.
• NCBI ID: WP_096835599.1
• Uniprot ID: -
• Organism: Escherichia coli strain NCTC9064
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1010052..1020984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL184_RS04895 (NCTC9064_00999)	truD	1010463..1011512 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EL184_RS04900 (NCTC9064_01000)	surE	1011493..1012254 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EL184_RS04905 (NCTC9064_01001)	pcm	1012248..1012874 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EL184_RS04910 (NCTC9064_01002)	nlpD	1013059..1014153 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EL184_RS04925 (NCTC9064_01006)	rpoS	1015052..1015984 (+)	933	WP_096835599.1	RNA polymerase sigma factor RpoS	Regulator
EL184_RS04930 (NCTC9064_01007)	-	1016105..1016512 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
EL184_RS04935 (NCTC9064_01008)	-	1016659..1017252 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EL184_RS04940 (NCTC9064_01009)	-	1017252..1018679 (+)	1428	WP_096835598.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EL184_RS04945 (NCTC9064_01010)	-	1018690..1018926 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EL184_RS04950 (NCTC9064_01011)	ygbN	1018966..1020330 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35717.51 Da
• Isoelectric Point: 4.6799

>NTDB_id=1001249 EL184_RS04925 WP_096835599.1 1015052..1015984(+) (rpoS) [Escherichia coli strain NCTC9064]
MTEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR
LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR
TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV
KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE

Nucleotide

• Length: 933 bp

>NTDB_id=1001249 EL184_RS04925 WP_096835599.1 1015052..1015984(+) (rpoS) [Escherichia coli strain NCTC9064]
ATCACCGAGGTTTTTGACGAAAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATC
GCAGGGAGCCACACAGCGTGTGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCG
AAGAAGAAGTTTATTTTGCGCGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGT
CTGGTGGTAAAAATTGCCCGCCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCT
GATCCGCGCGGTAGAGAAGTTTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGA
TTGAACGGGCGATTATGAACCAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGA
ACCGCACGTGAGTTGTCCCATAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGA
TGACGTCAGCCGTATGCTTCGTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGT
TGCTGGACATCCTGGCCGATGAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTC
AAATGGCTGTTCGAGCTGAACGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAAC
ACTGGAAGATGTAGGTCGTGAAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGC
GCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (36-68)

• Sigma-70 region 3 (Sigma70_r3) (154-228)

• Sigma-70, region 4 (Sigma70_r4) (242-295)

• Sigma-70 region 2 (Sigma70_r2) (74-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	75.817	98.71	0.748