Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EL107_RS06135 Genome accession   NZ_LR134314
Coordinates   1213128..1213841 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8302     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208128..1218841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL107_RS06125 (NCTC8302_01215) treC 1209198..1210826 (-) 1629 WP_011185052.1 alpha,alpha-phosphotrehalase -
  EL107_RS06130 (NCTC8302_01216) treP 1210893..1212917 (-) 2025 WP_011185053.1 PTS system trehalose-specific EIIBC component -
  EL107_RS06135 (NCTC8302_01217) treR 1213128..1213841 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  EL107_RS06145 (NCTC8302_01218) - 1214154..1215173 (+) 1020 WP_126409763.1 IS30-like element IS1239 family transposase -
  EL107_RS06150 (NCTC8302_01219) pflA 1215164..1215955 (-) 792 WP_027968879.1 pyruvate formate-lyase-activating protein -
  EL107_RS06155 (NCTC8302_01220) - 1216033..1217367 (-) 1335 WP_002995844.1 hemolysin family protein -
  EL107_RS06160 (NCTC8302_01221) - 1217500..1218054 (-) 555 WP_002990955.1 tRNA (mnm(5)s(2)U34)-methyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1001185 EL107_RS06135 WP_002982243.1 1213128..1213841(+) (treR) [Streptococcus pyogenes strain NCTC8302]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1001185 EL107_RS06135 WP_002982243.1 1213128..1213841(+) (treR) [Streptococcus pyogenes strain NCTC8302]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTTTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679