Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EL186_RS23170 Genome accession   NZ_LR134311
Coordinates   4793289..4794281 (-) Length   330 a.a.
NCBI ID   WP_126352645.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC9113     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4788289..4799281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL186_RS23160 (NCTC9113_04595) yieP 4791181..4791873 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  EL186_RS23165 (NCTC9113_04596) mdtD 4791896..4793323 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  EL186_RS23170 (NCTC9113_04597) cytR 4793289..4794281 (-) 993 WP_126352645.1 ribose operon transcriptional repressor RbsR Regulator
  EL186_RS23175 (NCTC9113_04598) rbsK 4794285..4795214 (-) 930 WP_001300603.1 ribokinase -
  EL186_RS23180 (NCTC9113_04599) rbsB 4795340..4796230 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  EL186_RS23185 (NCTC9113_04600) rbsC 4796255..4797220 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  EL186_RS23190 (NCTC9113_04601) rbsA 4797225..4798730 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  EL186_RS23195 (NCTC9113_04602) rbsD 4798738..4799157 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36551.81 Da        Isoelectric Point: 5.2059

>NTDB_id=1001130 EL186_RS23170 WP_126352645.1 4793289..4794281(-) (cytR) [Escherichia coli strain NCTC9113]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALAHSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1001130 EL186_RS23170 WP_126352645.1 4793289..4794281(-) (cytR) [Escherichia coli strain NCTC9113]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCATAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment