Detailed information NTG1000894

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL295_RS19460
• Genome accession: NZ_LR134308
• Coordinates: 3988001..3989005 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCTC11445
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3983001..3994005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL295_RS19440 (NCTC11445_03809)	-	3983484..3984491 (+)	1008	WP_003098486.1	TolB family protein	-
EL295_RS19450 (NCTC11445_03810)	mutS	3984617..3987184 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
EL295_RS19455 (NCTC11445_03811)	fdxA	3987251..3987574 (+)	324	WP_003119354.1	ferredoxin FdxA	-
EL295_RS19460 (NCTC11445_03813)	rpoS	3988001..3989005 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EL295_RS19465 (NCTC11445_03814)	-	3989110..3990003 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
EL295_RS19470 (NCTC11445_03815)	-	3990049..3990684 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EL295_RS19475 (NCTC11445_03816)	surE	3990717..3991466 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EL295_RS19480 (NCTC11445_03817)	truD	3991454..3992521 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
EL295_RS19485 (NCTC11445_03818)	ispF	3992518..3992991 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EL295_RS19490 (NCTC11445_03819)	fghA	3993062..3993913 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1000894 EL295_RS19460 WP_003113871.1 3988001..3989005(-) (rpoS) [Pseudomonas aeruginosa strain NCTC11445]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1000894 EL295_RS19460 WP_003113871.1 3988001..3989005(-) (rpoS) [Pseudomonas aeruginosa strain NCTC11445]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653