Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EL295_RS17015 Genome accession   NZ_LR134308
Coordinates   3480954..3481283 (-) Length   109 a.a.
NCBI ID   WP_033973917.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NCTC11445     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3475954..3486283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL295_RS17000 (NCTC11445_03333) uvrB 3477341..3479353 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  EL295_RS17005 (NCTC11445_03334) - 3479541..3480737 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  EL295_RS17015 (NCTC11445_03336) comEA/comE1 3480954..3481283 (-) 330 WP_033973917.1 ComEA family DNA-binding protein Machinery gene
  EL295_RS17020 (NCTC11445_03337) - 3481474..3483471 (-) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  EL295_RS17025 (NCTC11445_03338) - 3483626..3484666 (-) 1041 WP_371032227.1 MraY family glycosyltransferase -
  EL295_RS17030 (NCTC11445_03339) - 3484688..3485638 (-) 951 WP_126453247.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11309.27 Da        Isoelectric Point: 9.1462

>NTDB_id=1000889 EL295_RS17015 WP_033973917.1 3480954..3481283(-) (comEA/comE1) [Pseudomonas aeruginosa strain NCTC11445]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1000889 EL295_RS17015 WP_033973917.1 3480954..3481283(-) (comEA/comE1) [Pseudomonas aeruginosa strain NCTC11445]
ATGCACCTAATCAAATCTGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394